Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ETA19_RS07935 Genome accession   NZ_CP035401
Coordinates   1506326..1506604 (+) Length   92 a.a.
NCBI ID   WP_128992771.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103837     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1501326..1511604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA19_RS07915 (ETA19_07915) panEB 1502514..1503425 (+) 912 WP_021479370.1 ketopantoate reductase family protein -
  ETA19_RS07920 (ETA19_07920) ampS 1503459..1504691 (-) 1233 WP_003232341.1 aminopeptidase -
  ETA19_RS07925 (ETA19_07925) ykpC 1504800..1504934 (-) 135 WP_003238865.1 protein YkpC -
  ETA19_RS07930 (ETA19_07930) mreBH 1505035..1506042 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  ETA19_RS07935 (ETA19_07935) abrB 1506326..1506604 (+) 279 WP_128992771.1 transcriptional regulator AbhA Regulator
  ETA19_RS07940 (ETA19_07940) kinC 1506794..1508080 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  ETA19_RS07945 (ETA19_07945) ykqA 1508096..1508923 (+) 828 WP_128992773.1 gamma-glutamylcyclotransferase -
  ETA19_RS07950 (ETA19_07950) ktrC 1508986..1509651 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  ETA19_RS07955 (ETA19_07955) ade 1509806..1511539 (+) 1734 WP_072174081.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10226.08 Da        Isoelectric Point: 6.9809

>NTDB_id=340169 ETA19_RS07935 WP_128992771.1 1506326..1506604(+) (abrB) [Bacillus subtilis strain SRCM103837]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKVYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=340169 ETA19_RS07935 WP_128992771.1 1506326..1506604(+) (abrB) [Bacillus subtilis strain SRCM103837]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGTATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment