Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FOB75_RS13010 Genome accession   NZ_CP044062
Coordinates   2572300..2574135 (+) Length   611 a.a.
NCBI ID   WP_150334490.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2567300..2579135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS12990 (FOB75_12990) ggt 2567717..2569477 (-) 1761 WP_150334488.1 gamma-glutamyltransferase -
  FOB75_RS12995 (FOB75_12995) - 2569588..2570247 (-) 660 WP_005458574.1 LysE family translocator -
  FOB75_RS13000 (FOB75_13000) - 2570339..2571136 (-) 798 WP_041170667.1 AraC family transcriptional regulator -
  FOB75_RS13005 (FOB75_13005) rarD 2571211..2572125 (-) 915 WP_150334489.1 EamA family transporter RarD -
  FOB75_RS13010 (FOB75_13010) recQ 2572300..2574135 (+) 1836 WP_150334490.1 ATP-dependent DNA helicase RecQ Machinery gene
  FOB75_RS13015 (FOB75_13015) - 2574145..2574450 (+) 306 WP_005458579.1 DUF3630 family protein -
  FOB75_RS13025 (FOB75_13025) - 2574744..2575412 (+) 669 WP_005497391.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  FOB75_RS13030 (FOB75_13030) gppA 2575617..2577110 (-) 1494 WP_020839844.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  FOB75_RS13035 (FOB75_13035) rhlB 2577130..2578443 (-) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  FOB75_RS13040 (FOB75_13040) trxA 2578555..2578881 (+) 327 WP_005458583.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69160.06 Da        Isoelectric Point: 6.8049

>NTDB_id=340160 FOB75_RS13010 WP_150334490.1 2572300..2574135(+) (recQ) [Vibrio parahaemolyticus strain FDAARGOS_667]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNCMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPVSQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=340160 FOB75_RS13010 WP_150334490.1 2572300..2574135(+) (recQ) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCGGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACTGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTGATGCGTGACT
TCATCGAGCGCCTCGAAAATCTGCCCTTGGCGATGATTGCGGTGGATGAAGCACACTGTATCTCGCAGTGGGGACACGAT
TTCCGTCCTGAATACGCCGCTCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTTCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAACCGGTTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATTATTTATTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGTATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCGATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTGCGTCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCAGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGTGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGGCTGCTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCTGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(31-189)

HRDC domain (HRDC)

(537-603)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393