Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ETA18_RS14335 Genome accession   NZ_CP035400
Coordinates   2732327..2733073 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2727327..2738073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS14310 (ETA18_14310) mreC 2727734..2728606 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  ETA18_RS14315 (ETA18_14315) mreB 2728637..2729650 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ETA18_RS14320 (ETA18_14320) radC 2729742..2730437 (-) 696 WP_014480455.1 DNA repair protein RadC -
  ETA18_RS14325 (ETA18_14325) maf 2730474..2731043 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  ETA18_RS14330 (ETA18_14330) spoIIB 2731196..2732194 (-) 999 WP_095843864.1 stage II sporulation protein SpoIIB -
  ETA18_RS14335 (ETA18_14335) comC 2732327..2733073 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  ETA18_RS14340 (ETA18_14340) folC 2733214..2734506 (-) 1293 WP_043856952.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ETA18_RS14345 (ETA18_14345) valS 2734566..2737208 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  ETA18_RS14350 (ETA18_14350) - 2737656..2737847 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=340113 ETA18_RS14335 WP_072592551.1 2732327..2733073(-) (comC) [Bacillus subtilis strain SRCM103835]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=340113 ETA18_RS14335 WP_072592551.1 2732327..2733073(-) (comC) [Bacillus subtilis strain SRCM103835]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment