Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ETA18_RS11230 Genome accession   NZ_CP035400
Coordinates   2201479..2202099 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2196479..2207099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS11190 (ETA18_11190) ptsA 2197613..2198119 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  ETA18_RS11195 (ETA18_11195) ypqA 2198255..2198674 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  ETA18_RS11200 (ETA18_11200) sppG 2198695..2199072 (-) 378 WP_128993049.1 YppG family protein -
  ETA18_RS11205 (ETA18_11205) yppF 2199260..2199448 (+) 189 WP_003230690.1 YppF family protein -
  ETA18_RS11210 (ETA18_11210) yppE 2199487..2199858 (-) 372 WP_015714151.1 YppE family protein -
  ETA18_RS11215 (ETA18_11215) yppD 2199904..2200149 (-) 246 WP_004398488.1 YppD family protein -
  ETA18_RS11220 (ETA18_11220) sspM 2200347..2200451 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ETA18_RS11225 (ETA18_11225) yppC 2200476..2201438 (-) 963 WP_128993051.1 DUF2515 domain-containing protein -
  ETA18_RS11230 (ETA18_11230) recU 2201479..2202099 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ETA18_RS11235 (ETA18_11235) ponA 2202121..2204871 (+) 2751 WP_128993053.1 PBP1A family penicillin-binding protein -
  ETA18_RS11240 (ETA18_11240) ypoC 2204947..2205441 (-) 495 WP_029726783.1 YpoC family protein -
  ETA18_RS11245 (ETA18_11245) nth 2205438..2206097 (-) 660 WP_009967580.1 endonuclease III -
  ETA18_RS11250 (ETA18_11250) dnaD 2206116..2206814 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=340093 ETA18_RS11230 WP_004399067.1 2201479..2202099(+) (recU) [Bacillus subtilis strain SRCM103835]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=340093 ETA18_RS11230 WP_004399067.1 2201479..2202099(+) (recU) [Bacillus subtilis strain SRCM103835]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment