Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ETA18_RS07935 Genome accession   NZ_CP035400
Coordinates   1506325..1506603 (+) Length   92 a.a.
NCBI ID   WP_128992771.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1501325..1511603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS07915 (ETA18_07915) panEB 1502513..1503424 (+) 912 WP_021479370.1 ketopantoate reductase family protein -
  ETA18_RS07920 (ETA18_07920) ampS 1503458..1504690 (-) 1233 WP_003232341.1 aminopeptidase -
  ETA18_RS07925 (ETA18_07925) ykpC 1504799..1504933 (-) 135 WP_003238865.1 protein YkpC -
  ETA18_RS07930 (ETA18_07930) mreBH 1505034..1506041 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  ETA18_RS07935 (ETA18_07935) abrB 1506325..1506603 (+) 279 WP_128992771.1 transcriptional regulator AbhA Regulator
  ETA18_RS07940 (ETA18_07940) kinC 1506793..1508079 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  ETA18_RS07945 (ETA18_07945) ykqA 1508095..1508922 (+) 828 WP_128992773.1 gamma-glutamylcyclotransferase -
  ETA18_RS07950 (ETA18_07950) ktrC 1508985..1509650 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  ETA18_RS07955 (ETA18_07955) ade 1509805..1511538 (+) 1734 WP_072174081.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10226.08 Da        Isoelectric Point: 6.9809

>NTDB_id=340088 ETA18_RS07935 WP_128992771.1 1506325..1506603(+) (abrB) [Bacillus subtilis strain SRCM103835]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKVYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=340088 ETA18_RS07935 WP_128992771.1 1506325..1506603(+) (abrB) [Bacillus subtilis strain SRCM103835]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGTATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment