Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   FVA82_RS29875 Genome accession   NZ_CP044006
Coordinates   6215753..6216277 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain E90     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6210753..6221277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVA82_RS29860 (FVA82_29860) aroB 6211869..6212975 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  FVA82_RS29865 (FVA82_29865) aroK 6213025..6213543 (-) 519 WP_003095833.1 shikimate kinase AroK -
  FVA82_RS29870 (FVA82_29870) pilQ 6213555..6215699 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  FVA82_RS29875 (FVA82_29875) comL/pilP 6215753..6216277 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  FVA82_RS29880 (FVA82_29880) pilO 6216274..6216897 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  FVA82_RS29885 (FVA82_29885) pilN 6216894..6217490 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  FVA82_RS29890 (FVA82_29890) pilM 6217490..6218554 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  FVA82_RS29895 (FVA82_29895) - 6218739..6221210 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=340083 FVA82_RS29875 WP_003095836.1 6215753..6216277(-) (comL/pilP) [Pseudomonas aeruginosa strain E90]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=340083 FVA82_RS29875 WP_003095836.1 6215753..6216277(-) (comL/pilP) [Pseudomonas aeruginosa strain E90]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362