Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FVA82_RS26935 Genome accession   NZ_CP044006
Coordinates   5585949..5586374 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain E90     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5580949..5591374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVA82_RS26920 (FVA82_26920) pilX 5581513..5582100 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  FVA82_RS26925 (FVA82_26925) pilY1 5582112..5585603 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  FVA82_RS26930 (FVA82_26930) pilY2 5585605..5585952 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  FVA82_RS26935 (FVA82_26935) comF 5585949..5586374 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  FVA82_RS26940 (FVA82_26940) ispH 5586421..5587365 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FVA82_RS26945 (FVA82_26945) fkpB 5587451..5587891 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FVA82_RS26950 (FVA82_26950) lspA 5587884..5588393 (-) 510 WP_003102615.1 signal peptidase II -
  FVA82_RS26955 (FVA82_26955) ileS 5588386..5591217 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=340077 FVA82_RS26935 WP_003094721.1 5585949..5586374(+) (comF) [Pseudomonas aeruginosa strain E90]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=340077 FVA82_RS26935 WP_003094721.1 5585949..5586374(+) (comF) [Pseudomonas aeruginosa strain E90]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383

Multiple sequence alignment