Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ETA18_RS05735 Genome accession   NZ_CP035400
Coordinates   1106676..1107254 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM103835     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101676..1112254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS05715 (ETA18_05715) hemAT 1102187..1103485 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  ETA18_RS05720 (ETA18_05720) comW 1103624..1105153 (-) 1530 WP_128992604.1 FAD-dependent oxidoreductase -
  ETA18_RS05725 (ETA18_05725) yhxC 1105265..1106122 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ETA18_RS05730 (ETA18_05730) yhzC 1106150..1106383 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ETA18_RS05735 (ETA18_05735) comK 1106676..1107254 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ETA18_RS05740 (ETA18_05740) yhxD 1107300..1108199 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ETA18_RS05745 (ETA18_05745) yhjA 1108416..1108685 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  ETA18_RS05750 (ETA18_05750) yhjB 1108729..1110198 (-) 1470 WP_029317574.1 sodium:solute symporter -
  ETA18_RS05755 (ETA18_05755) yhjC 1110195..1110395 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ETA18_RS05760 (ETA18_05760) - 1110594..1110965 (-) 372 WP_014476361.1 hypothetical protein -
  ETA18_RS05765 (ETA18_05765) yhjE 1111117..1111740 (+) 624 WP_010886465.1 VTT domain-containing protein -
  ETA18_RS05770 (ETA18_05770) lepB 1111742..1112248 (+) 507 WP_029317575.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=340074 ETA18_RS05735 WP_003245329.1 1106676..1107254(+) (comK) [Bacillus subtilis strain SRCM103835]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=340074 ETA18_RS05735 WP_003245329.1 1106676..1107254(+) (comK) [Bacillus subtilis strain SRCM103835]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment