Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FVA82_RS19595 Genome accession   NZ_CP044006
Coordinates   4122553..4123149 (-) Length   198 a.a.
NCBI ID   WP_031689839.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain E90     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4117553..4128149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVA82_RS33025 - 4117947..4118096 (-) 150 Protein_3789 hypothetical protein -
  FVA82_RS19575 (FVA82_19575) - 4118189..4119772 (+) 1584 WP_073653839.1 flavin-containing monooxygenase -
  FVA82_RS19580 (FVA82_19580) - 4119769..4120656 (+) 888 WP_023128002.1 SDR family NAD(P)-dependent oxidoreductase -
  FVA82_RS19585 (FVA82_19585) - 4120730..4121269 (+) 540 WP_003103931.1 CbrC family protein -
  FVA82_RS19590 (FVA82_19590) - 4121282..4122430 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  FVA82_RS19595 (FVA82_19595) recR 4122553..4123149 (-) 597 WP_031689839.1 recombination mediator RecR Machinery gene
  FVA82_RS19600 (FVA82_19600) - 4123228..4123554 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  FVA82_RS19605 (FVA82_19605) dnaX 4123600..4125663 (-) 2064 WP_031689840.1 DNA polymerase III subunit gamma/tau -
  FVA82_RS19610 (FVA82_19610) - 4125700..4126566 (+) 867 WP_003120462.1 substrate-binding periplasmic protein -
  FVA82_RS19620 (FVA82_19620) - 4126820..4127197 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21159.40 Da        Isoelectric Point: 6.0063

>NTDB_id=340054 FVA82_RS19595 WP_031689839.1 4122553..4123149(-) (recR) [Pseudomonas aeruginosa strain E90]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIGQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=340054 FVA82_RS19595 WP_031689839.1 4122553..4123149(-) (recR) [Pseudomonas aeruginosa strain E90]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGGCCAGCTACTGGCC
GGCCGTGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48