Detailed information NTG0340052

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ETA12_RS19100
• Genome accession: NZ_CP035399
• Coordinates: 3775573..3776718 (+)
• Length: 381 a.a.
• NCBI ID: WP_079891436.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SRCM103788
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3770573..3781718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETA12_RS19080 (ETA12_19080)	fnr	3771047..3771763 (-)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-
ETA12_RS19085 (ETA12_19085)	-	3771861..3773051 (-)	1191	WP_129093797.1	nitrate/nitrite transporter	-
ETA12_RS19090 (ETA12_19090)	argS	3773186..3774856 (-)	1671	WP_025649385.1	arginine--tRNA ligase	-
ETA12_RS19095 (ETA12_19095)	-	3774853..3775281 (-)	429	WP_003151069.1	DUF1934 family protein	-
ETA12_RS19100 (ETA12_19100)	rapF	3775573..3776718 (+)	1146	WP_079891436.1	Rap family tetratricopeptide repeat protein	Regulator
ETA12_RS19105 (ETA12_19105)	-	3776702..3776821 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ETA12_RS19110 (ETA12_19110)	speB	3776944..3777816 (-)	873	WP_003151054.1	agmatinase	-
ETA12_RS19115 (ETA12_19115)	speE	3777876..3778706 (-)	831	WP_017418706.1	spermidine synthase	-
ETA12_RS19120 (ETA12_19120)	-	3778906..3780978 (+)	2073	WP_017418705.1	transglycosylase domain-containing protein	-
ETA12_RS19125 (ETA12_19125)	-	3781003..3781434 (-)	432	WP_017418704.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45816.31 Da
• Isoelectric Point: 5.0722

>NTDB_id=340052 ETA12_RS19100 WP_079891436.1 3775573..3776718(+) (rapF) [Bacillus velezensis strain SRCM103788]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYFIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=340052 ETA12_RS19100 WP_079891436.1 3775573..3776718(+) (rapF) [Bacillus velezensis strain SRCM103788]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTCATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533