Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ETA12_RS01820 Genome accession   NZ_CP035399
Coordinates   342574..342972 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM103788     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 337574..347972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA12_RS01795 (ETA12_01795) - 337747..338949 (+) 1203 WP_014416870.1 GTP-binding protein -
  ETA12_RS01800 (ETA12_01800) - 339014..340150 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  ETA12_RS01805 (ETA12_01805) - 340164..340598 (+) 435 WP_061861834.1 RDD family protein -
  ETA12_RS01810 (ETA12_01810) - 340670..340993 (+) 324 WP_007409357.1 YckD family protein -
  ETA12_RS01815 (ETA12_01815) - 341097..342533 (+) 1437 WP_061861835.1 family 1 glycosylhydrolase -
  ETA12_RS01820 (ETA12_01820) nin/comJ 342574..342972 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  ETA12_RS01825 (ETA12_01825) nucA/comI 342993..343430 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ETA12_RS01830 (ETA12_01830) hxlB 343761..344318 (-) 558 WP_065180943.1 6-phospho-3-hexuloisomerase -
  ETA12_RS01835 (ETA12_01835) hxlA 344315..344950 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  ETA12_RS01840 (ETA12_01840) - 345182..345544 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=339987 ETA12_RS01820 WP_007609299.1 342574..342972(-) (nin/comJ) [Bacillus velezensis strain SRCM103788]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=339987 ETA12_RS01820 WP_007609299.1 342574..342972(-) (nin/comJ) [Bacillus velezensis strain SRCM103788]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment