Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ETA10_RS16375 Genome accession   NZ_CP035397
Coordinates   3024809..3025453 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103773     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3019809..3030453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS16340 (ETA10_16340) mrpB 3020999..3021430 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  ETA10_RS16345 (ETA10_16345) mrpC 3021430..3021771 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ETA10_RS16350 (ETA10_16350) mrpD 3021764..3023245 (+) 1482 WP_046381299.1 Na+/H+ antiporter subunit D -
  ETA10_RS16355 (ETA10_16355) mrpE 3023251..3023727 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ETA10_RS16360 (ETA10_16360) mrpF 3023727..3024011 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ETA10_RS16365 (ETA10_16365) mnhG 3023995..3024369 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ETA10_RS16370 (ETA10_16370) yuxO 3024410..3024790 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  ETA10_RS16375 (ETA10_16375) comA 3024809..3025453 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ETA10_RS16380 (ETA10_16380) comP 3025534..3027831 (-) 2298 WP_087614687.1 histidine kinase Regulator
  ETA10_RS16385 (ETA10_16385) comX 3027839..3028000 (-) 162 WP_003241045.1 competence pheromone ComX -
  ETA10_RS16390 (ETA10_16390) - 3028015..3028875 (-) 861 WP_046160795.1 polyprenyl synthetase family protein -
  ETA10_RS16395 (ETA10_16395) degQ 3029060..3029200 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ETA10_RS16400 (ETA10_16400) - 3029422..3029547 (+) 126 WP_120028613.1 hypothetical protein -
  ETA10_RS16405 (ETA10_16405) - 3029662..3030030 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=339963 ETA10_RS16375 WP_003220716.1 3024809..3025453(-) (comA) [Bacillus subtilis strain SRCM103773]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=339963 ETA10_RS16375 WP_003220716.1 3024809..3025453(-) (comA) [Bacillus subtilis strain SRCM103773]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment