Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ETA10_RS11270 Genome accession   NZ_CP035397
Coordinates   2109777..2110397 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103773     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2104777..2115397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS11230 (ETA10_11230) ptsA 2105908..2106414 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  ETA10_RS11235 (ETA10_11235) ypqA 2106552..2106971 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  ETA10_RS11240 (ETA10_11240) sppG 2106992..2107369 (-) 378 WP_004398696.1 YppG family protein -
  ETA10_RS11245 (ETA10_11245) yppF 2107557..2107745 (+) 189 WP_003230690.1 YppF family protein -
  ETA10_RS11250 (ETA10_11250) yppE 2107784..2108155 (-) 372 WP_003246080.1 YppE family protein -
  ETA10_RS11255 (ETA10_11255) yppD 2108201..2108446 (-) 246 WP_004398488.1 YppD family protein -
  ETA10_RS11260 (ETA10_11260) sspM 2108645..2108749 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ETA10_RS11265 (ETA10_11265) yppC 2108774..2109736 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ETA10_RS11270 (ETA10_11270) recU 2109777..2110397 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ETA10_RS11275 (ETA10_11275) ponA 2110419..2113163 (+) 2745 WP_046160510.1 PBP1A family penicillin-binding protein -
  ETA10_RS11280 (ETA10_11280) ypoC 2113239..2113733 (-) 495 WP_009967579.1 YpoC family protein -
  ETA10_RS11285 (ETA10_11285) nth 2113730..2114389 (-) 660 WP_009967580.1 endonuclease III -
  ETA10_RS11290 (ETA10_11290) dnaD 2114408..2115106 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=339938 ETA10_RS11270 WP_004399067.1 2109777..2110397(+) (recU) [Bacillus subtilis strain SRCM103773]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=339938 ETA10_RS11270 WP_004399067.1 2109777..2110397(+) (recU) [Bacillus subtilis strain SRCM103773]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment