Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ETA10_RS05815 Genome accession   NZ_CP035397
Coordinates   1110419..1110997 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103773     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105419..1115997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS05795 (ETA10_05795) hemAT 1105930..1107228 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  ETA10_RS05800 (ETA10_05800) comW 1107367..1108896 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  ETA10_RS05805 (ETA10_05805) yhxC 1109008..1109865 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ETA10_RS05810 (ETA10_05810) yhzC 1109893..1110126 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ETA10_RS05815 (ETA10_05815) comK 1110419..1110997 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  ETA10_RS05820 (ETA10_05820) yhxD 1111044..1111943 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ETA10_RS05825 (ETA10_05825) yhjA 1112160..1112429 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  ETA10_RS05830 (ETA10_05830) yhjB 1112473..1113942 (-) 1470 WP_029726292.1 sodium:solute symporter -
  ETA10_RS05835 (ETA10_05835) yhjC 1113939..1114139 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ETA10_RS05840 (ETA10_05840) - 1114347..1114709 (-) 363 WP_003233132.1 hypothetical protein -
  ETA10_RS05845 (ETA10_05845) yhjE 1114861..1115484 (+) 624 WP_010886465.1 VTT domain-containing protein -
  ETA10_RS05850 (ETA10_05850) lepB 1115486..1115992 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=339919 ETA10_RS05815 WP_029317573.1 1110419..1110997(+) (comK) [Bacillus subtilis strain SRCM103773]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=339919 ETA10_RS05815 WP_029317573.1 1110419..1110997(+) (comK) [Bacillus subtilis strain SRCM103773]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment