Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   F3K21_RS28050 Genome accession   NZ_CP043957
Coordinates   6484088..6485083 (+) Length   331 a.a.
NCBI ID   WP_013000908.1    Uniprot ID   C9ZBY4
Organism   Streptomyces sp. LBUM 1480     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6479088..6490083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K21_RS28035 (F3K21_28500) - 6480496..6482139 (+) 1644 WP_210525153.1 ABC transporter substrate-binding protein -
  F3K21_RS28040 (F3K21_28505) - 6482146..6483069 (+) 924 WP_013000910.1 ABC transporter permease -
  F3K21_RS28045 (F3K21_28510) - 6483062..6484078 (+) 1017 WP_060906408.1 ABC transporter permease -
  F3K21_RS28050 (F3K21_28515) amiE 6484088..6485083 (+) 996 WP_013000908.1 ABC transporter ATP-binding protein Regulator
  F3K21_RS28055 (F3K21_28520) - 6485064..6486179 (+) 1116 WP_210533587.1 dipeptide ABC transporter ATP-binding protein -
  F3K21_RS28060 (F3K21_28525) - 6486356..6488473 (-) 2118 WP_037728450.1 prolyl oligopeptidase family serine peptidase -
  F3K21_RS28065 (F3K21_28530) - 6488698..6488892 (+) 195 WP_005480627.1 hypothetical protein -
  F3K21_RS28070 (F3K21_28535) mshB 6489015..6489986 (+) 972 WP_199839972.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36458.22 Da        Isoelectric Point: 6.1787

>NTDB_id=339898 F3K21_RS28050 WP_013000908.1 6484088..6485083(+) (amiE) [Streptomyces sp. LBUM 1480]
MLLEVRDLHVEFRTRDGVAKAVNGVDYGVDEGQTLAVLGESGSGKSVTAQAIMGILDMPPGRITGGEILFKGQDLLKLKE
DERRKIRGAEMAMIFQDALSSLNPVLSVGDQLGEMFVVHRGMSKKDARARAVELMDRVRIPAAKERVRDYPHQFSGGMRQ
RIMIAMALALEPALIIADEPTTALDVTVQAQVMDLLAELQRELRMGLVLITHDLGVVADVADRIAVMYAGRIVESAPVHD
IYKAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLMNIPPGCAFNPRCPMARDVCRTDVPPLYDVEPADGIRTSACHF
WRECLDDHHHG

Nucleotide


Download         Length: 996 bp        

>NTDB_id=339898 F3K21_RS28050 WP_013000908.1 6484088..6485083(+) (amiE) [Streptomyces sp. LBUM 1480]
ATGCTGCTCGAAGTGCGTGATCTGCACGTGGAGTTCCGGACGCGGGACGGGGTCGCCAAGGCGGTCAACGGGGTCGACTA
CGGGGTGGACGAGGGGCAGACGCTGGCCGTGCTCGGGGAGTCCGGCTCGGGGAAGTCGGTCACCGCGCAGGCGATCATGG
GCATCCTCGACATGCCGCCGGGCCGGATCACCGGCGGCGAGATCCTCTTCAAGGGCCAGGACCTGCTGAAGCTCAAGGAG
GACGAGCGCCGCAAGATCCGGGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCCCTCAACCCCGTCCTCTC
CGTCGGCGACCAGCTCGGCGAGATGTTCGTCGTCCACCGGGGCATGTCGAAGAAGGACGCCCGCGCCCGGGCCGTGGAGC
TGATGGACCGGGTCCGCATCCCGGCCGCAAAGGAACGGGTACGGGACTACCCGCACCAGTTCTCGGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGCTGGCCCTCGAACCCGCACTGATCATCGCCGACGAACCCACCACCGCACTGGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTCCTCGCCGAACTGCAGCGCGAACTGCGCATGGGTCTCGTCCTCATCACCCACGACC
TCGGAGTCGTCGCCGACGTCGCCGACCGCATCGCCGTGATGTACGCGGGCCGCATCGTGGAGTCCGCCCCGGTCCACGAC
ATCTACAAGGCCCCGGCCCACCCGTACACCCGGGGCCTGCTCGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGTCTGCCGCCCAACCTGATGAACATCCCGCCCGGCTGCGCCTTCAACCCCCGCTGCCCGATGGCCC
GCGACGTGTGCCGCACCGACGTGCCCCCGCTGTACGACGTCGAGCCGGCCGACGGCATCCGGACGAGCGCCTGCCACTTC
TGGAGGGAGTGCCTCGATGACCACCACCACGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9ZBY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.188

96.677

0.456
  amiE Streptococcus thermophilus LMG 18311

46.25

96.677

0.447
  amiE Streptococcus thermophilus LMD-9

46.25

96.677

0.447
  oppD Streptococcus mutans UA159

48.366

92.447

0.447