Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ES968_RS08010 Genome accession   NZ_CP035395
Coordinates   1526741..1527019 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM103697     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521741..1532019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES968_RS07990 (ES968_07990) panEB 1522928..1523839 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  ES968_RS07995 (ES968_07995) ampS 1523873..1525105 (-) 1233 WP_003232341.1 aminopeptidase -
  ES968_RS08000 (ES968_08000) ykpC 1525215..1525349 (-) 135 WP_003238865.1 protein YkpC -
  ES968_RS08005 (ES968_08005) mreBH 1525450..1526457 (-) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  ES968_RS08010 (ES968_08010) abrB 1526741..1527019 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  ES968_RS08015 (ES968_08015) kinC 1527209..1528495 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  ES968_RS08020 (ES968_08020) ykqA 1528511..1529339 (+) 829 Protein_1515 gamma-glutamylcyclotransferase -
  ES968_RS08025 (ES968_08025) ktrC 1529402..1530067 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  ES968_RS08030 (ES968_08030) ade 1530222..1531955 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=339853 ES968_RS08010 WP_003244728.1 1526741..1527019(+) (abrB) [Bacillus subtilis strain SRCM103697]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=339853 ES968_RS08010 WP_003244728.1 1526741..1527019(+) (abrB) [Bacillus subtilis strain SRCM103697]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment