Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ES967_RS16045 Genome accession   NZ_CP035394
Coordinates   3076145..3076789 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103696     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3071145..3081789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES967_RS16010 (ES967_16010) mrpB 3072335..3072766 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ES967_RS16015 (ES967_16015) mrpC 3072766..3073107 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ES967_RS16020 (ES967_16020) mrpD 3073100..3074581 (+) 1482 WP_110109473.1 Na+/H+ antiporter subunit D -
  ES967_RS16025 (ES967_16025) mrpE 3074587..3075063 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ES967_RS16030 (ES967_16030) mrpF 3075063..3075347 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ES967_RS16035 (ES967_16035) mnhG 3075331..3075705 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ES967_RS16040 (ES967_16040) yuxO 3075746..3076126 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  ES967_RS16045 (ES967_16045) comA 3076145..3076789 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ES967_RS16050 (ES967_16050) comP 3076870..3079182 (-) 2313 WP_041332996.1 sensor histidine kinase Regulator
  ES967_RS16055 (ES967_16055) comX 3079198..3079419 (-) 222 WP_014480704.1 competence pheromone ComX -
  ES967_RS16060 (ES967_16060) - 3079421..3080284 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  ES967_RS16065 (ES967_16065) degQ 3080469..3080609 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ES967_RS16070 (ES967_16070) - 3080831..3080956 (+) 126 WP_003228793.1 hypothetical protein -
  ES967_RS16075 (ES967_16075) - 3081071..3081439 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=339805 ES967_RS16045 WP_003220716.1 3076145..3076789(-) (comA) [Bacillus subtilis strain SRCM103696]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=339805 ES967_RS16045 WP_003220716.1 3076145..3076789(-) (comA) [Bacillus subtilis strain SRCM103696]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment