Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   F3K20_RS18200 Genome accession   NZ_CP043956
Coordinates   4210988..4211986 (-) Length   332 a.a.
NCBI ID   WP_013002905.1    Uniprot ID   C9YWE0
Organism   Streptomyces sp. LBUM 1482     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4205988..4216986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K20_RS18185 (F3K20_18395) - 4206460..4207302 (-) 843 WP_013002908.1 DeoR/GlpR family DNA-binding transcription regulator -
  F3K20_RS18190 (F3K20_18400) - 4207574..4209259 (-) 1686 WP_210524721.1 MFS transporter -
  F3K20_RS18195 (F3K20_18405) - 4209321..4210295 (+) 975 WP_037724646.1 YafY family protein -
  F3K20_RS18200 (F3K20_18410) rpoS 4210988..4211986 (-) 999 WP_013002905.1 sigma-70 family RNA polymerase sigma factor Regulator
  F3K20_RS18205 (F3K20_18415) - 4212180..4212698 (+) 519 WP_210524722.1 GNAT family N-acetyltransferase -
  F3K20_RS18210 (F3K20_18420) - 4212714..4213127 (-) 414 WP_210524723.1 DUF1330 domain-containing protein -
  F3K20_RS18215 (F3K20_18425) - 4213355..4214140 (-) 786 WP_060906900.1 class III extradiol ring-cleavage dioxygenase -
  F3K20_RS18220 (F3K20_18430) - 4214347..4214853 (+) 507 WP_013002901.1 MarR family transcriptional regulator -
  F3K20_RS18225 (F3K20_18435) - 4215257..4216858 (-) 1602 WP_199844966.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37120.71 Da        Isoelectric Point: 4.8325

>NTDB_id=339799 F3K20_RS18200 WP_013002905.1 4210988..4211986(-) (rpoS) [Streptomyces sp. LBUM 1482]
MATRAVAARRSSASGRTDAARSVRASGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQVIEAGVFAQQILDGEEEAQAD
ATREELEALVADSERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNADRVTDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAVA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=339799 F3K20_RS18200 WP_013002905.1 4210988..4211986(-) (rpoS) [Streptomyces sp. LBUM 1482]
ATGGCAACCCGTGCCGTCGCCGCTCGTCGTTCGTCCGCCTCCGGCCGGACCGACGCGGCTCGCAGCGTTCGCGCCTCTGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGGTCATCGAGGCGGGCGTGTTCGCCCAGCAGATCCTCGACGGCGAGGAGGAGGCCCAGGCGGAC
GCGACCCGCGAAGAGCTCGAAGCCCTCGTCGCCGACAGCGAGCGGGCCAAGGACATCTTCATACGGTCGAACCTGCGCCT
CGTCGTGGCCGTCGCCCGGCGCTATCCGCGCAGTGGTCTGCCCCTGCTCGACCTCATCCAGGAGGGCAACGCGGGCCTGG
TCCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACCTGGTGGATCCGGCAGGCCATC
ACCCGGTCGATCGCGGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTCGTCGAGGAGCTGGGCCGGATCCGCCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGGCGCGACCCCGAGCCCGCCGAGATCGCCGCCGAGCTGGGCTCCAACGCGGACC
GTGTCACCGACGTCCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTCCTGGAGGACACCTCCGCGGTCTCACCCGAGCAGTCCGTACTGACGCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGGCGCCTCGACCAGCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGCACCC
TCACCGAGGTCGGCAAGGAGCACGGGCTCACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTCGAACTGAAG
AAGCTCGCCCGCGACACGGGCTTCGACGCGGTCGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9YWE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361