Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   F3K20_RS14995 Genome accession   NZ_CP043956
Coordinates   3452421..3453101 (-) Length   226 a.a.
NCBI ID   WP_013003578.1    Uniprot ID   A0ABU8GA55
Organism   Streptomyces sp. LBUM 1482     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3447421..3458101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K20_RS14980 (F3K20_15135) - 3449306..3450261 (+) 956 Protein_2998 hypothetical protein -
  F3K20_RS14985 (F3K20_15140) - 3450411..3450695 (-) 285 WP_210524598.1 hypothetical protein -
  F3K20_RS14990 (F3K20_15145) clpX 3450932..3452217 (-) 1286 Protein_3000 ATP-dependent Clp protease ATP-binding subunit ClpX -
  F3K20_RS14995 (F3K20_15150) clpP 3452421..3453101 (-) 681 WP_013003578.1 ATP-dependent Clp protease proteolytic subunit Regulator
  F3K20_RS15000 (F3K20_15155) clpP 3453184..3453795 (-) 612 WP_037729632.1 ATP-dependent Clp protease proteolytic subunit Regulator
  F3K20_RS15005 (F3K20_15160) tig 3454199..3455599 (-) 1401 WP_013003576.1 trigger factor -
  F3K20_RS15020 (F3K20_15175) - 3456247..3456441 (-) 195 WP_033526477.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24999.33 Da        Isoelectric Point: 4.6224

>NTDB_id=339792 F3K20_RS14995 WP_013003578.1 3452421..3453101(-) (clpP) [Streptomyces sp. LBUM 1482]
MNDFPGSGLYDGARSQYSGPTAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRGQLEDMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNNNVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=339792 F3K20_RS14995 WP_013003578.1 3452421..3453101(-) (clpP) [Streptomyces sp. LBUM 1482]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGACGGCGCACGCTCCCAGTACTCGGGCCCGACGGCCGAGTCCCGTTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGGGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCCGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTCGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCGTACAGCGAGACGGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGTGGGCAGCTGGAGGACATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACGCGCAAGATGAACAACAACAACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus mutans UA159

45.366

90.708

0.412
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus pyogenes JRS4

44.776

88.938

0.398
  clpP Streptococcus pyogenes MGAS315

44.776

88.938

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.554

89.381

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.564

89.381

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385

Multiple sequence alignment