Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ES967_RS11130 Genome accession   NZ_CP035394
Coordinates   2187265..2187885 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103696     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182265..2192885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES967_RS11090 (ES967_11090) ptsA 2183396..2183902 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  ES967_RS11095 (ES967_11095) ypqA 2184040..2184459 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ES967_RS11100 (ES967_11100) sppG 2184480..2184857 (-) 378 WP_004398696.1 YppG family protein -
  ES967_RS11105 (ES967_11105) yppF 2185045..2185233 (+) 189 WP_003230690.1 YppF family protein -
  ES967_RS11110 (ES967_11110) yppE 2185272..2185643 (-) 372 WP_003246080.1 YppE family protein -
  ES967_RS11115 (ES967_11115) yppD 2185689..2185934 (-) 246 WP_004398488.1 YppD family protein -
  ES967_RS11120 (ES967_11120) sspM 2186133..2186237 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ES967_RS11125 (ES967_11125) yppC 2186262..2187224 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ES967_RS11130 (ES967_11130) recU 2187265..2187885 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ES967_RS11135 (ES967_11135) ponA 2187907..2190651 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  ES967_RS11140 (ES967_11140) ypoC 2190727..2191221 (-) 495 WP_009967579.1 YpoC family protein -
  ES967_RS11145 (ES967_11145) nth 2191218..2191877 (-) 660 WP_009967580.1 endonuclease III -
  ES967_RS11150 (ES967_11150) dnaD 2191896..2192594 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=339780 ES967_RS11130 WP_004399067.1 2187265..2187885(+) (recU) [Bacillus subtilis strain SRCM103696]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=339780 ES967_RS11130 WP_004399067.1 2187265..2187885(+) (recU) [Bacillus subtilis strain SRCM103696]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment