Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   F3K20_RS02315 Genome accession   NZ_CP043956
Coordinates   505262..505864 (+) Length   200 a.a.
NCBI ID   WP_037728779.1    Uniprot ID   -
Organism   Streptomyces sp. LBUM 1482     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 500262..510864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K20_RS02290 (F3K20_02300) - 500801..501490 (+) 690 WP_013005946.1 DUF3105 domain-containing protein -
  F3K20_RS02295 (F3K20_02305) - 501802..502722 (+) 921 WP_210524199.1 SGNH/GDSL hydrolase family protein -
  F3K20_RS02300 (F3K20_02310) - 502719..503735 (-) 1017 WP_210524200.1 TerC family protein -
  F3K20_RS02305 (F3K20_02315) - 503892..504371 (-) 480 WP_013005943.1 VOC family protein -
  F3K20_RS02310 (F3K20_02320) - 504606..505262 (+) 657 WP_013005942.1 ATP-dependent Clp protease proteolytic subunit -
  F3K20_RS02315 (F3K20_02325) clpP 505262..505864 (+) 603 WP_037728779.1 ATP-dependent Clp protease proteolytic subunit Regulator
  F3K20_RS02320 (F3K20_02330) - 505944..506372 (-) 429 WP_037728777.1 helix-turn-helix transcriptional regulator -
  F3K20_RS02325 (F3K20_02335) - 506479..507085 (-) 607 Protein_468 DinB family protein -
  F3K20_RS02330 (F3K20_02340) - 507328..508797 (+) 1470 WP_013005938.1 FG-GAP-like repeat-containing protein -
  F3K20_RS02335 (F3K20_02345) - 508831..510168 (-) 1338 WP_199816726.1 DUF6777 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21503.41 Da        Isoelectric Point: 5.0502

>NTDB_id=339775 F3K20_RS02315 WP_037728779.1 505262..505864(+) (clpP) [Streptomyces sp. LBUM 1482]
MGSYTIPNVVERTAQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAIYINSPGGSFTSLMAIY
DTMSYVRAPVSTFCVGQAASTAAVLLAGGDAGRRFVLEHARVLLGQPASGGRQGTVSDLALQAKEMVRIRSQVEEVLARH
TGRATAELRADMDRDKVFTAQEAVAYGLADEVLNRRLVGV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=339775 F3K20_RS02315 WP_037728779.1 505262..505864(+) (clpP) [Streptomyces sp. LBUM 1482]
ATGGGGAGCTACACGATTCCGAACGTGGTCGAGCGGACCGCGCAGGGCGAGCGGTCGTACGACGTGTTCAGCCGGCTGCT
GTCCGAGCGGATCATCTTCCTCGGCACCGAGATCGACGACGGAGTGGCCAACGTCGTCATCGCACAGCTGCTCCACCTGG
AGTCCTCGGCGCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGCGGATCGTTCACTTCACTGATGGCGATCTAC
GACACGATGTCCTACGTGCGCGCGCCGGTCTCGACGTTCTGCGTCGGGCAGGCGGCCTCCACCGCGGCGGTGCTGCTGGC
GGGCGGGGACGCCGGGCGGCGGTTCGTGCTGGAGCACGCGCGGGTGCTGCTGGGGCAGCCGGCCAGCGGGGGCCGTCAGG
GCACGGTCTCCGATCTCGCCCTGCAGGCCAAGGAGATGGTGCGGATCCGGTCCCAGGTCGAGGAGGTGCTCGCGCGTCAC
ACGGGCCGCGCGACCGCGGAACTGCGGGCCGACATGGACCGGGACAAGGTGTTCACGGCTCAGGAGGCGGTGGCCTACGG
GCTGGCGGACGAGGTGTTGAACCGGCGGCTGGTGGGGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

48.936

94

0.46
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.368

95

0.45
  clpP Streptococcus pneumoniae D39

40.741

94.5

0.385
  clpP Streptococcus pneumoniae R6

40.741

94.5

0.385
  clpP Streptococcus pneumoniae TIGR4

40.741

94.5

0.385
  clpP Streptococcus pneumoniae Rx1

40.741

94.5

0.385
  clpP Streptococcus pyogenes JRS4

40.212

94.5

0.38
  clpP Streptococcus pyogenes MGAS315

40.212

94.5

0.38
  clpP Streptococcus thermophilus LMG 18311

39.175

97

0.38
  clpP Streptococcus thermophilus LMD-9

39.175

97

0.38
  clpP Streptococcus mutans UA159

39.683

94.5

0.375
  clpP Lactococcus lactis subsp. cremoris KW2

39.267

95.5

0.375

Multiple sequence alignment