Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   F3P16_RS10310 Genome accession   NZ_CP043953
Coordinates   2187584..2188219 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain K09-14     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2182584..2193219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3P16_RS10285 (F3P16_10285) - 2182640..2183620 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  F3P16_RS10290 (F3P16_10290) kdsB 2183632..2184393 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  F3P16_RS10295 (F3P16_10295) lpxK 2184403..2185413 (-) 1011 WP_000050454.1 tetraacyldisaccharide 4'-kinase -
  F3P16_RS10300 (F3P16_10300) msbA 2185416..2187143 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  F3P16_RS10305 (F3P16_10305) - 2187140..2187568 (-) 429 WP_000669683.1 ExbD/TolR family protein -
  F3P16_RS10310 (F3P16_10310) exbB 2187584..2188219 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  F3P16_RS10315 (F3P16_10315) - 2188269..2189156 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  F3P16_RS10320 (F3P16_10320) - 2189153..2189935 (-) 783 WP_000057212.1 ParA family protein -
  F3P16_RS10325 (F3P16_10325) rsmG 2189957..2190589 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  F3P16_RS10330 (F3P16_10330) murU 2190677..2191366 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  F3P16_RS10335 (F3P16_10335) - 2191366..2192379 (-) 1014 WP_069371027.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=339732 F3P16_RS10310 WP_000264037.1 2187584..2188219(-) (exbB) [Acinetobacter baumannii strain K09-14]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=339732 F3P16_RS10310 WP_000264037.1 2187584..2188219(-) (exbB) [Acinetobacter baumannii strain K09-14]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393