Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ES966_RS18110 Genome accession   NZ_CP035393
Coordinates   3583927..3584616 (-) Length   229 a.a.
NCBI ID   WP_199803302.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM103691     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3578927..3589616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES966_RS18075 (ES966_18075) fliW 3579019..3579450 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ES966_RS18080 (ES966_18080) - 3579480..3580049 (-) 570 WP_017418818.1 DUF6470 family protein -
  ES966_RS18085 (ES966_18085) flgL 3580139..3581056 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ES966_RS18090 (ES966_18090) flgK 3581068..3582585 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  ES966_RS18095 (ES966_18095) - 3582601..3583083 (-) 483 WP_129110411.1 flagellar protein FlgN -
  ES966_RS18100 (ES966_18100) flgM 3583098..3583364 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ES966_RS18105 (ES966_18105) - 3583434..3583853 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ES966_RS18110 (ES966_18110) comFC 3583927..3584616 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  ES966_RS18115 (ES966_18115) - 3584622..3584906 (-) 285 WP_022553866.1 competence protein ComFB -
  ES966_RS18120 (ES966_18120) comFA 3584964..3586349 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  ES966_RS18125 (ES966_18125) - 3586457..3587305 (-) 849 WP_003151387.1 DegV family protein -
  ES966_RS18130 (ES966_18130) degU 3587403..3588092 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ES966_RS18135 (ES966_18135) degS 3588169..3589332 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=339727 ES966_RS18110 WP_199803302.1 3583927..3584616(-) (comFC) [Bacillus velezensis strain SRCM103691]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=339727 ES966_RS18110 WP_199803302.1 3583927..3584616(-) (comFC) [Bacillus velezensis strain SRCM103691]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment