Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CLJ_RS06765 Genome accession   NC_012658
Coordinates   1113216..1114169 (+) Length   317 a.a.
NCBI ID   WP_012720573.1    Uniprot ID   -
Organism   Clostridium botulinum Ba4 str. 657     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1108216..1119169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLJ_RS06740 (CLJ_B1090) - 1108370..1108606 (+) 237 WP_003361003.1 SHOCT domain-containing protein -
  CLJ_RS06745 (CLJ_B1091) - 1108866..1109567 (+) 702 WP_003361004.1 response regulator transcription factor -
  CLJ_RS06750 (CLJ_B1092) - 1109567..1110973 (+) 1407 WP_012721102.1 HAMP domain-containing sensor histidine kinase -
  CLJ_RS06755 (CLJ_B1093) - 1111290..1111976 (-) 687 WP_012720854.1 DNA alkylation repair protein -
  CLJ_RS06760 (CLJ_B1094) - 1112212..1112970 (-) 759 WP_041173323.1 AraC family transcriptional regulator -
  CLJ_RS06765 (CLJ_B1095) ceuB 1113216..1114169 (+) 954 WP_012720573.1 ABC transporter permease Machinery gene
  CLJ_RS06770 (CLJ_B1096) - 1114159..1115109 (+) 951 WP_012720996.1 iron chelate uptake ABC transporter family permease subunit -
  CLJ_RS06775 (CLJ_B1097) - 1115106..1115861 (+) 756 WP_003361010.1 ATP-binding cassette domain-containing protein -
  CLJ_RS06780 (CLJ_B1098) - 1115931..1116875 (+) 945 WP_012721035.1 siderophore ABC transporter substrate-binding protein -
  CLJ_RS06785 (CLJ_B1100) - 1117077..1118078 (+) 1002 WP_012721342.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34902.31 Da        Isoelectric Point: 10.0382

>NTDB_id=33972 CLJ_RS06765 WP_012720573.1 1113216..1114169(+) (ceuB) [Clostridium botulinum Ba4 str. 657]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIIVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFIGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=33972 CLJ_RS06765 WP_012720573.1 1113216..1114169(+) (ceuB) [Clostridium botulinum Ba4 str. 657]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATCAGTAGAATCCCAAGACTTATAAGTATTATTA
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGGAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTTGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATACAATCTTATT
CAAAGTATTGCCTCTTGGCTTCAGGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTGGGAAAA
ATACCATTTATAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGCTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment