Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ES966_RS13925 Genome accession   NZ_CP035393
Coordinates   2794351..2795103 (-) Length   250 a.a.
NCBI ID   WP_071181911.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM103691     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2789351..2800103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES966_RS13895 (ES966_13895) - 2789704..2790138 (+) 435 WP_017418279.1 helix-turn-helix transcriptional regulator -
  ES966_RS13900 (ES966_13900) - 2790152..2790598 (+) 447 WP_017418280.1 ImmA/IrrE family metallo-endopeptidase -
  ES966_RS13905 (ES966_13905) - 2790637..2792061 (+) 1425 WP_017418281.1 recombinase family protein -
  ES966_RS13910 (ES966_13910) radC 2792074..2792481 (-) 408 Protein_2689 DNA repair protein RadC -
  ES966_RS13915 (ES966_13915) - 2792513..2793082 (-) 570 WP_012118105.1 Maf family protein -
  ES966_RS13920 (ES966_13920) - 2793223..2794224 (-) 1002 WP_025649687.1 SPOR domain-containing protein -
  ES966_RS13925 (ES966_13925) comC 2794351..2795103 (-) 753 WP_071181911.1 A24 family peptidase Machinery gene
  ES966_RS13930 (ES966_13930) - 2795244..2796536 (-) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ES966_RS13935 (ES966_13935) - 2796595..2799237 (-) 2643 WP_022552877.1 valine--tRNA ligase -
  ES966_RS13940 (ES966_13940) - 2799690..2799881 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27012.64 Da        Isoelectric Point: 9.2521

>NTDB_id=339716 ES966_RS13925 WP_071181911.1 2794351..2795103(-) (comC) [Bacillus velezensis strain SRCM103691]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=339716 ES966_RS13925 WP_071181911.1 2794351..2795103(-) (comC) [Bacillus velezensis strain SRCM103691]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCAGGAGCTGTTTGTGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment