Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   F3P16_RS03165 Genome accession   NZ_CP043953
Coordinates   650772..651134 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain K09-14     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 645772..656134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3P16_RS03150 (F3P16_03150) - 648266..649384 (-) 1119 WP_071210572.1 efflux RND transporter periplasmic adaptor subunit -
  F3P16_RS03155 (F3P16_03155) - 649444..650082 (-) 639 WP_002027721.1 hypothetical protein -
  F3P16_RS03160 (F3P16_03160) pilG 650365..650748 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  F3P16_RS03165 (F3P16_03165) pilH 650772..651134 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  F3P16_RS03170 (F3P16_03170) - 651195..651731 (+) 537 WP_071210570.1 chemotaxis protein CheW -
  F3P16_RS03175 (F3P16_03175) - 651778..653856 (+) 2079 WP_071210569.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=339710 F3P16_RS03165 WP_000101096.1 650772..651134(+) (pilH) [Acinetobacter baumannii strain K09-14]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=339710 F3P16_RS03165 WP_000101096.1 650772..651134(+) (pilH) [Acinetobacter baumannii strain K09-14]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment