Detailed information NTG0339663

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F3J96_RS20060
• Genome accession: NZ_CP043950
• Coordinates: 3997742..3998734 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ST95-32
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3992742..4003734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F3J96_RS20040 (F3J96_20045)	ygbM	3993373..3994149 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
F3J96_RS20045 (F3J96_20050)	ygbN	3994238..3995602 (+)	1365	WP_000104443.1	GntP family transporter	-
F3J96_RS20050 (F3J96_20055)	-	3995745..3996788 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
F3J96_RS20055 (F3J96_20060)	-	3997013..3997564 (+)	552	WP_001179442.1	flavodoxin family protein	-
F3J96_RS20060 (F3J96_20065)	rpoS	3997742..3998734 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F3J96_RS20065 (F3J96_20070)	nlpD	3998797..3999891 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
F3J96_RS20070 (F3J96_20075)	pcm	4000076..4000702 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
F3J96_RS20075 (F3J96_20080)	surE	4000696..4001457 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F3J96_RS20080 (F3J96_20085)	truD	4001438..4002487 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
F3J96_RS20085 (F3J96_20090)	ispF	4002484..4002963 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F3J96_RS20090 (F3J96_20095)	ispD	4002963..4003673 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=339663 F3J96_RS20060 WP_000081550.1 3997742..3998734(-) (rpoS) [Escherichia coli strain ST95-32]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=339663 F3J96_RS20060 WP_000081550.1 3997742..3998734(-) (rpoS) [Escherichia coli strain ST95-32]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715