Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F3J96_RS15795 Genome accession   NZ_CP043950
Coordinates   3137697..3139124 (+) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain ST95-32     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3132697..3144124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3J96_RS15755 (F3J96_15760) yeeW 3132881..3133075 (+) 195 WP_000988601.1 DUF5983 family protein -
  F3J96_RS15760 (F3J96_15765) - 3133121..3133201 (+) 81 Protein_3025 hypothetical protein -
  F3J96_RS15765 (F3J96_15770) - 3133490..3133636 (-) 147 Protein_3026 transposase domain-containing protein -
  F3J96_RS15770 (F3J96_15775) - 3133690..3133872 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  F3J96_RS15775 (F3J96_15780) tmaR 3133973..3134302 (-) 330 WP_000450409.1 DUF496 family protein -
  F3J96_RS15780 (F3J96_15785) yeeA 3134474..3135532 (-) 1059 WP_001200890.1 FUSC family protein -
  F3J96_RS15785 (F3J96_15790) sbmC 3135730..3136203 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  F3J96_RS15790 (F3J96_15795) dacD 3136322..3137488 (-) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  F3J96_RS15795 (F3J96_15800) sbcB 3137697..3139124 (+) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  F3J96_RS15800 (F3J96_15805) plaP 3139198..3140556 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  F3J96_RS15805 (F3J96_15810) yoeI 3140546..3140608 (-) 63 WP_010723108.1 membrane protein YoeI -
  F3J96_RS15810 (F3J96_15815) yeeY 3140823..3141752 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  F3J96_RS15815 (F3J96_15820) yeeZ 3141798..3142622 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  F3J96_RS15820 (F3J96_15825) yoeB 3142705..3142959 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  F3J96_RS15825 (F3J96_15830) yefM 3142956..3143207 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  F3J96_RS15830 (F3J96_15835) hisL 3143490..3143540 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=339650 F3J96_RS15795 WP_000980604.1 3137697..3139124(+) (sbcB) [Escherichia coli strain ST95-32]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=339650 F3J96_RS15795 WP_000980604.1 3137697..3139124(+) (sbcB) [Escherichia coli strain ST95-32]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAAGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment