Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ES965_RS13945 Genome accession   NZ_CP035391
Coordinates   2663592..2664338 (-) Length   248 a.a.
NCBI ID   WP_080474433.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103689     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2658592..2669338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS13920 (ES965_13920) mreC 2658998..2659870 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ES965_RS13925 (ES965_13925) mreB 2659901..2660914 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ES965_RS13930 (ES965_13930) radC 2661006..2661701 (-) 696 WP_003246034.1 DNA repair protein RadC -
  ES965_RS13935 (ES965_13935) maf 2661738..2662307 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  ES965_RS13940 (ES965_13940) spoIIB 2662460..2663458 (-) 999 WP_086344157.1 stage II sporulation protein SpoIIB -
  ES965_RS13945 (ES965_13945) comC 2663592..2664338 (-) 747 WP_080474433.1 A24 family peptidase Machinery gene
  ES965_RS13950 (ES965_13950) folC 2664479..2665771 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ES965_RS13955 (ES965_13955) valS 2665831..2668473 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  ES965_RS13960 (ES965_13960) - 2668921..2669112 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=339639 ES965_RS13945 WP_080474433.1 2663592..2664338(-) (comC) [Bacillus subtilis strain SRCM103689]
MLSLLFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=339639 ES965_RS13945 WP_080474433.1 2663592..2664338(-) (comC) [Bacillus subtilis strain SRCM103689]
ATGCTATCCCTTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment