Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ES965_RS12170 Genome accession   NZ_CP035391
Coordinates   2359277..2360080 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103689     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2354277..2365080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS12145 (ES965_12145) glpQB 2355415..2356146 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  ES965_RS12150 (ES965_12150) yqiI 2356225..2356845 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  ES965_RS12155 (ES965_12155) - 2356865..2357161 (-) 297 WP_014480225.1 hypothetical protein -
  ES965_RS12160 (ES965_12160) - 2357469..2357621 (+) 153 WP_014480226.1 hypothetical protein -
  ES965_RS12165 (ES965_12165) yqiG 2357694..2358812 (+) 1119 WP_129092521.1 NADH-dependent flavin oxidoreductase -
  ES965_RS12170 (ES965_12170) spo0A 2359277..2360080 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ES965_RS12175 (ES965_12175) spoIVB 2360356..2361636 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ES965_RS12180 (ES965_12180) recN 2361811..2363541 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  ES965_RS12185 (ES965_12185) argR 2363578..2364027 (-) 450 WP_029317927.1 arginine repressor ArgR -
  ES965_RS12190 (ES965_12190) yqxC 2364125..2364970 (-) 846 WP_014477301.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=339620 ES965_RS12170 WP_003226427.1 2359277..2360080(-) (spo0A) [Bacillus subtilis strain SRCM103689]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=339620 ES965_RS12170 WP_003226427.1 2359277..2360080(-) (spo0A) [Bacillus subtilis strain SRCM103689]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment