Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ES965_RS10360 Genome accession   NZ_CP035391
Coordinates   2050202..2051332 (+) Length   376 a.a.
NCBI ID   WP_032725937.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103689     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2045202..2056332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS21780 (ES965_10320) - 2045426..2045659 (+) 234 WP_082248634.1 hypothetical protein -
  ES965_RS10325 (ES965_10325) - 2045698..2046219 (-) 522 WP_124058240.1 hypothetical protein -
  ES965_RS10330 (ES965_10330) - 2046758..2047657 (+) 900 WP_124058242.1 S8 family serine peptidase -
  ES965_RS10335 (ES965_10335) - 2047681..2048532 (+) 852 WP_052501876.1 SAR2788 family putative toxin -
  ES965_RS10340 (ES965_10340) - 2048550..2048870 (+) 321 WP_043857657.1 hypothetical protein -
  ES965_RS10345 (ES965_10345) - 2048967..2049173 (-) 207 WP_043857658.1 hypothetical protein -
  ES965_RS10350 (ES965_10350) - 2049244..2049546 (+) 303 Protein_1972 SOS response-associated peptidase -
  ES965_RS21985 (ES965_10355) - 2049922..2050068 (+) 147 Protein_1973 phage holin -
  ES965_RS10360 (ES965_10360) rapC 2050202..2051332 (+) 1131 WP_032725937.1 tetratricopeptide repeat protein Regulator
  ES965_RS21535 - 2051322..2051465 (+) 144 WP_153801665.1 hypothetical protein -
  ES965_RS21790 (ES965_10365) - 2051619..2051819 (-) 201 WP_124058244.1 hypothetical protein -
  ES965_RS21795 - 2052041..2052210 (-) 170 Protein_1977 hypothetical protein -
  ES965_RS10375 (ES965_10375) - 2052208..2052363 (-) 156 Protein_1978 T7SS effector LXG polymorphic toxin -
  ES965_RS10380 (ES965_10380) yobM 2052464..2053021 (-) 558 WP_124058245.1 SMI1/KNR4 family protein -
  ES965_RS10385 (ES965_10385) aoxN 2053149..2054585 (+) 1437 WP_129092455.1 flavin monoamine oxidase family protein -
  ES965_RS10390 (ES965_10390) csaA 2054834..2055166 (-) 333 WP_085187532.1 chaperone CsaA -
  ES965_RS10395 (ES965_10395) yobQ 2055231..2055956 (-) 726 WP_129092862.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44394.15 Da        Isoelectric Point: 5.7041

>NTDB_id=339618 ES965_RS10360 WP_032725937.1 2050202..2051332(+) (rapC) [Bacillus subtilis strain SRCM103689]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=339618 ES965_RS10360 WP_032725937.1 2050202..2051332(+) (rapC) [Bacillus subtilis strain SRCM103689]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCCCACACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATAAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTTATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment