Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ES965_RS05660 Genome accession   NZ_CP035391
Coordinates   1084686..1085264 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM103689     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079686..1090264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS05640 (ES965_05640) hemAT 1080197..1081495 (-) 1299 WP_041338163.1 heme-based aerotactic transducer HemAT -
  ES965_RS05645 (ES965_05645) comW 1081634..1083163 (-) 1530 WP_129092376.1 FAD-dependent oxidoreductase -
  ES965_RS05650 (ES965_05650) yhxC 1083275..1084132 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ES965_RS05655 (ES965_05655) yhzC 1084160..1084393 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ES965_RS05660 (ES965_05660) comK 1084686..1085264 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ES965_RS05665 (ES965_05665) yhxD 1085311..1086210 (-) 900 WP_086343663.1 SDR family oxidoreductase -
  ES965_RS05670 (ES965_05670) yhjA 1086428..1086697 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  ES965_RS05675 (ES965_05675) yhjB 1086741..1088210 (-) 1470 WP_124059680.1 sodium:solute symporter -
  ES965_RS05680 (ES965_05680) yhjC 1088207..1088407 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  ES965_RS05685 (ES965_05685) - 1088615..1088977 (-) 363 WP_024571727.1 hypothetical protein -
  ES965_RS05690 (ES965_05690) yhjE 1089129..1089752 (+) 624 WP_010886465.1 VTT domain-containing protein -
  ES965_RS05695 (ES965_05695) lepB 1089754..1090260 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=339599 ES965_RS05660 WP_003245329.1 1084686..1085264(+) (comK) [Bacillus subtilis strain SRCM103689]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=339599 ES965_RS05660 WP_003245329.1 1084686..1085264(+) (comK) [Bacillus subtilis strain SRCM103689]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment