Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ES963_RS19030 Genome accession   NZ_CP035390
Coordinates   3534307..3535029 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103641     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529307..3540029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS18995 (ES963_18995) fliW 3529447..3529878 (-) 432 WP_046160903.1 flagellar assembly protein FliW -
  ES963_RS19000 (ES963_19000) yviE 3529899..3530474 (-) 576 WP_046160904.1 DUF6470 family protein -
  ES963_RS19005 (ES963_19005) flgL 3530521..3531417 (-) 897 WP_087614741.1 flagellar hook-associated protein FlgL -
  ES963_RS19010 (ES963_19010) flgK 3531428..3532951 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  ES963_RS19015 (ES963_19015) flgN 3532970..3533452 (-) 483 WP_129093160.1 flagellar protein FlgN -
  ES963_RS19020 (ES963_19020) flgM 3533468..3533734 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ES963_RS19025 (ES963_19025) yvyF 3533815..3534234 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  ES963_RS19030 (ES963_19030) comFC 3534307..3535029 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ES963_RS19035 (ES963_19035) comFB 3534993..3535289 (-) 297 WP_003227989.1 late competence protein ComFB -
  ES963_RS19040 (ES963_19040) comFA 3535349..3536740 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  ES963_RS19045 (ES963_19045) fakBA 3536847..3537692 (-) 846 WP_014481053.1 DegV family protein -
  ES963_RS19050 (ES963_19050) degU 3537790..3538479 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  ES963_RS19055 (ES963_19055) degS 3538562..3539719 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=339569 ES963_RS19030 WP_014481051.1 3534307..3535029(-) (comFC) [Bacillus subtilis strain SRCM103641]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=339569 ES963_RS19030 WP_014481051.1 3534307..3535029(-) (comFC) [Bacillus subtilis strain SRCM103641]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment