Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ES963_RS11650 Genome accession   NZ_CP035390
Coordinates   2172601..2173221 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103641     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2167601..2178221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS11610 (ES963_11610) ptsA 2168732..2169238 (-) 507 WP_029317998.1 PTS glucose transporter subunit IIA -
  ES963_RS11615 (ES963_11615) ypqA 2169376..2169795 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ES963_RS11620 (ES963_11620) sppG 2169816..2170193 (-) 378 WP_004398696.1 YppG family protein -
  ES963_RS11625 (ES963_11625) yppF 2170381..2170569 (+) 189 WP_003230690.1 YppF family protein -
  ES963_RS11630 (ES963_11630) yppE 2170608..2170979 (-) 372 WP_015714151.1 YppE family protein -
  ES963_RS11635 (ES963_11635) yppD 2171025..2171270 (-) 246 WP_015251831.1 YppD family protein -
  ES963_RS11640 (ES963_11640) sspM 2171469..2171573 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ES963_RS11645 (ES963_11645) yppC 2171598..2172560 (-) 963 WP_032729081.1 DUF2515 domain-containing protein -
  ES963_RS11650 (ES963_11650) recU 2172601..2173221 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ES963_RS11655 (ES963_11655) ponA 2173243..2175996 (+) 2754 WP_029317996.1 PBP1A family penicillin-binding protein -
  ES963_RS11660 (ES963_11660) ypoC 2176072..2176566 (-) 495 WP_009967579.1 YpoC family protein -
  ES963_RS11665 (ES963_11665) nth 2176563..2177222 (-) 660 WP_009967580.1 endonuclease III -
  ES963_RS11670 (ES963_11670) dnaD 2177241..2177939 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=339538 ES963_RS11650 WP_004399067.1 2172601..2173221(+) (recU) [Bacillus subtilis strain SRCM103641]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=339538 ES963_RS11650 WP_004399067.1 2172601..2173221(+) (recU) [Bacillus subtilis strain SRCM103641]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment