Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ES963_RS05785 Genome accession   NZ_CP035390
Coordinates   1106621..1107199 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103641     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101621..1112199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS05765 (ES963_05765) hemAT 1102132..1103430 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  ES963_RS05770 (ES963_05770) comW 1103569..1105098 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  ES963_RS05775 (ES963_05775) yhxC 1105210..1106067 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ES963_RS05780 (ES963_05780) yhzC 1106095..1106328 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ES963_RS05785 (ES963_05785) comK 1106621..1107199 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  ES963_RS05790 (ES963_05790) yhxD 1107246..1108145 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ES963_RS05795 (ES963_05795) yhjA 1108362..1108631 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  ES963_RS05800 (ES963_05800) yhjB 1108675..1110144 (-) 1470 WP_046160243.1 sodium:solute symporter -
  ES963_RS05805 (ES963_05805) yhjC 1110141..1110341 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ES963_RS05810 (ES963_05810) - 1110540..1110911 (-) 372 WP_046160244.1 hypothetical protein -
  ES963_RS05815 (ES963_05815) yhjE 1111063..1111686 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  ES963_RS05820 (ES963_05820) lepB 1111688..1112194 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=339519 ES963_RS05785 WP_029317573.1 1106621..1107199(+) (comK) [Bacillus subtilis strain SRCM103641]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=339519 ES963_RS05785 WP_029317573.1 1106621..1107199(+) (comK) [Bacillus subtilis strain SRCM103641]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment