Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F3P14_RS05755 Genome accession   NZ_CP043942
Coordinates   1173865..1174380 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain AR216.2b     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168865..1179380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3P14_RS05710 (F3P14_05710) csrA 1169452..1169637 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  F3P14_RS05740 (F3P14_05740) yqaB 1171095..1171661 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F3P14_RS05745 (F3P14_05745) yqaA 1171658..1172086 (+) 429 WP_039023139.1 YqaA family protein -
  F3P14_RS05750 (F3P14_05750) gshA 1172159..1173715 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  F3P14_RS05755 (F3P14_05755) luxS 1173865..1174380 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  F3P14_RS05760 (F3P14_05760) emrB 1174444..1175982 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  F3P14_RS05765 (F3P14_05765) emrA 1175999..1177171 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F3P14_RS05770 (F3P14_05770) emrR 1177298..1177828 (-) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F3P14_RS05775 (F3P14_05775) ygaH 1177919..1178254 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  F3P14_RS05780 (F3P14_05780) ygaZ 1178244..1178981 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=339462 F3P14_RS05755 WP_001130211.1 1173865..1174380(+) (luxS) [Escherichia coli strain AR216.2b]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=339462 F3P14_RS05755 WP_001130211.1 1173865..1174380(+) (luxS) [Escherichia coli strain AR216.2b]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment