Detailed information NTG0339459

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F3P14_RS05480
• Genome accession: NZ_CP043942
• Coordinates: 1121046..1122038 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR216.2b
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1116046..1127038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F3P14_RS05450 (F3P14_05450)	ispD	1116107..1116817 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F3P14_RS05455 (F3P14_05455)	ispF	1116817..1117296 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F3P14_RS05460 (F3P14_05460)	truD	1117293..1118342 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
F3P14_RS05465 (F3P14_05465)	surE	1118323..1119084 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F3P14_RS05470 (F3P14_05470)	pcm	1119078..1119704 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F3P14_RS05475 (F3P14_05475)	nlpD	1119889..1120983 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
F3P14_RS05480 (F3P14_05480)	rpoS	1121046..1122038 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F3P14_RS05485 (F3P14_05485)	ygbN	1122132..1123496 (-)	1365	WP_000104441.1	GntP family transporter	-
F3P14_RS05490 (F3P14_05490)	ygbM	1123585..1124361 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
F3P14_RS05495 (F3P14_05495)	ygbL	1124366..1125004 (-)	639	WP_001278994.1	aldolase	-
F3P14_RS05500 (F3P14_05500)	otnK	1125001..1126263 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=339459 F3P14_RS05480 WP_000081550.1 1121046..1122038(+) (rpoS) [Escherichia coli strain AR216.2b]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=339459 F3P14_RS05480 WP_000081550.1 1121046..1122038(+) (rpoS) [Escherichia coli strain AR216.2b]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715