Detailed information NTG0033941

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VC395_RS13815
• Genome accession: NC_012582
• Coordinates: 2929331..2930338 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O395
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2924331..2935338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VC395_RS13790 (VC395_2785)	rraA	2924906..2925421 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
VC395_RS13795 (VC395_2786)	-	2925496..2926413 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VC395_RS13800 (VC395_2787)	hslU	2926517..2927848 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
VC395_RS13805 (VC395_2788)	hslV	2927914..2928471 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
VC395_RS13810 (VC395_2789)	-	2928608..2929159 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
VC395_RS13815 (VC395_2790)	cytR	2929331..2930338 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
VC395_RS13820 (VC395_2791)	priA	2930644..2932848 (-)	2205	WP_001247858.1	primosomal protein N'	-
VC395_RS13825 (VC395_2792)	rpmE	2933103..2933321 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
VC395_RS13830 (VC395_2794)	-	2933629..2934906 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
VC395_RS13835 (VC395_2795)	metJ	2935017..2935334 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=33941 VC395_RS13815 WP_000224452.1 2929331..2930338(-) (cytR) [Vibrio cholerae O395]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=33941 VC395_RS13815 WP_000224452.1 2929331..2930338(-) (cytR) [Vibrio cholerae O395]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904