Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   FS841_RS15620 Genome accession   NZ_CP043937
Coordinates   3266951..3268186 (+) Length   411 a.a.
NCBI ID   WP_001161842.1    Uniprot ID   -
Organism   Escherichia coli strain RM14516     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3261951..3273186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS841_RS15605 (FS841_15740) - 3262466..3264142 (+) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -
  FS841_RS15610 (FS841_15745) kdsB 3264152..3264892 (+) 741 WP_000030759.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FS841_RS15615 (FS841_15750) - 3264889..3266916 (+) 2028 WP_000579510.1 capsular polysaccharide biosynthesis protein -
  FS841_RS15620 (FS841_15755) kpsS 3266951..3268186 (+) 1236 WP_001161842.1 capsule biosynthesis protein Regulator
  FS841_RS15625 (FS841_15760) - 3268248..3269219 (+) 972 WP_001315005.1 IS481-like element ISEc18 family transposase -
  FS841_RS15630 (FS841_15765) - 3269625..3272537 (-) 2913 WP_053295894.1 glycosyltransferase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 49051.73 Da        Isoelectric Point: 10.2058

>NTDB_id=339397 FS841_RS15620 WP_001161842.1 3266951..3268186(+) (kpsS) [Escherichia coli strain RM14516]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMNSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNAVYYGGRFFENRMMV
ENKTHLAIKNR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=339397 FS841_RS15620 WP_001161842.1 3266951..3268186(+) (kpsS) [Escherichia coli strain RM14516]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGTGATCCGGATTTTTATCGTAAATTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGAACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCTAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGATGAAGACGCAGGTTAATGCAGTTTATTATGGGGGAAGGTTTTTTGAAAACAGAATGATGGTG
GAAAATAAAACACATCTCGCAATAAAAAACAGATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.494

96.107

0.38