Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FS841_RS02350 Genome accession   NZ_CP043937
Coordinates   511862..512467 (+) Length   201 a.a.
NCBI ID   WP_001195026.1    Uniprot ID   A0A2T3RX43
Organism   Escherichia coli strain RM14516     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 506862..517467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS841_RS02320 (FS841_02330) rsmS 507564..507728 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  FS841_RS02325 (FS841_02335) priC 507742..508269 (-) 528 WP_000844858.1 primosomal replication protein N'' -
  FS841_RS02330 (FS841_02340) ybaN 508339..508716 (+) 378 WP_001188905.1 DUF454 family protein -
  FS841_RS02335 (FS841_02345) apt 508869..509420 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FS841_RS02340 (FS841_02350) dnaX 509549..511480 (+) 1932 WP_000121995.1 DNA polymerase III subunit gamma/tau -
  FS841_RS02345 (FS841_02355) ybaB 511533..511862 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FS841_RS02350 (FS841_02360) recR 511862..512467 (+) 606 WP_001195026.1 recombination mediator RecR Machinery gene
  FS841_RS02355 (FS841_02365) htpG 512577..514451 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  FS841_RS02360 (FS841_02370) adk 514632..515276 (+) 645 WP_001220233.1 adenylate kinase -
  FS841_RS02365 (FS841_02375) hemH 515408..516370 (+) 963 WP_001250117.1 ferrochelatase -
  FS841_RS02370 (FS841_02380) aes 516367..517326 (-) 960 WP_000801694.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21904.96 Da        Isoelectric Point: 5.0698

>NTDB_id=339360 FS841_RS02350 WP_001195026.1 511862..512467(+) (recR) [Escherichia coli strain RM14516]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=339360 FS841_RS02350 WP_001195026.1 511862..512467(+) (recR) [Escherichia coli strain RM14516]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTACCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGGCGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RX43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.729

99.005

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.005

0.448