Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FS841_RS00550 | Genome accession | NZ_CP043937 |
| Coordinates | 121669..122109 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain RM14516 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 116669..127109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FS841_RS00525 (FS841_00525) | coaE | 117159..117779 (-) | 621 | WP_001269513.1 | dephospho-CoA kinase | - |
| FS841_RS00530 | - | 117804..117848 (+) | 45 | WP_120795372.1 | protein YacM | - |
| FS841_RS00535 (FS841_00530) | guaC | 118004..119047 (+) | 1044 | WP_001217337.1 | GMP reductase | - |
| FS841_RS00540 (FS841_00535) | hofC | 119082..120284 (-) | 1203 | WP_000157287.1 | protein transport protein HofC | - |
| FS841_RS00545 (FS841_00540) | pilB | 120274..121659 (-) | 1386 | WP_001025168.1 | type II secretion system protein GspE | Machinery gene |
| FS841_RS00550 (FS841_00545) | pilA | 121669..122109 (-) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| FS841_RS00555 (FS841_00550) | nadC | 122312..123205 (-) | 894 | WP_001135167.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FS841_RS00560 (FS841_00555) | ampD | 123293..123844 (+) | 552 | WP_000923726.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FS841_RS00565 (FS841_00560) | ampE | 123841..124695 (+) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| FS841_RS00570 (FS841_00565) | aroP | 124738..126111 (-) | 1374 | WP_000969912.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=339355 FS841_RS00550 WP_000360904.1 121669..122109(-) (pilA) [Escherichia coli strain RM14516]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=339355 FS841_RS00550 WP_000360904.1 121669..122109(-) (pilA) [Escherichia coli strain RM14516]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGTAATGGCATCCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGTTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGTAATGGCATCCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGTTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |