Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EKL02_RS09525 Genome accession   NZ_CP035311
Coordinates   2076106..2077479 (+) Length   457 a.a.
NCBI ID   WP_128901826.1    Uniprot ID   A0A410USR4
Organism   Janthinobacterium sp. 17J80-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2071106..2082479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKL02_RS09500 (EKL02_09500) rimI 2071253..2071744 (+) 492 WP_241687670.1 ribosomal protein S18-alanine N-acetyltransferase -
  EKL02_RS09505 (EKL02_09505) - 2071741..2072601 (+) 861 WP_128901822.1 uracil-DNA glycosylase -
  EKL02_RS09510 (EKL02_09510) - 2072585..2073568 (+) 984 WP_128901823.1 DUF1853 family protein -
  EKL02_RS09515 (EKL02_09515) lplT 2073565..2074827 (-) 1263 WP_128901824.1 lysophospholipid transporter LplT -
  EKL02_RS09520 (EKL02_09520) alr 2074980..2076080 (+) 1101 WP_128901825.1 alanine racemase -
  EKL02_RS09525 (EKL02_09525) radA 2076106..2077479 (+) 1374 WP_128901826.1 DNA repair protein RadA Machinery gene
  EKL02_RS09530 (EKL02_09530) - 2077520..2078692 (-) 1173 WP_128901827.1 MFS transporter -
  EKL02_RS09535 (EKL02_09535) hpnE 2078904..2080232 (-) 1329 WP_128901828.1 hydroxysqualene dehydroxylase HpnE -
  EKL02_RS09540 (EKL02_09540) hpnD 2080245..2081078 (-) 834 WP_128901829.1 presqualene diphosphate synthase HpnD -
  EKL02_RS09545 (EKL02_09545) hpnC 2081189..2082007 (-) 819 WP_128901830.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48672.21 Da        Isoelectric Point: 7.3690

>NTDB_id=339267 EKL02_RS09525 WP_128901826.1 2076106..2077479(+) (radA) [Janthinobacterium sp. 17J80-10]
MAKPKTNYTCTECGGVSAKWAGQCPACGQWNTLVETLVETVGNRYSTPQQGLAQATPVLSLADIEAIDVPRFTTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSRERKVLYISGEESGAQIALRAKRLAVDAQELKLQAEIQLEKILAT
LAEQKPQVAVIDSIQTMYSDALTSAPGSVAQVRECAAQLTRVAKQTGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVAGSCVMVTQEGTRPLLVEIQALVDTSHVPN
ARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVGGVKITEPAADLAVLLAIQSSMRNKPLPRGLAVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAMIPKANAPKQKIEGLTIIGVERIDEALDKIRNTDL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=339267 EKL02_RS09525 WP_128901826.1 2076106..2077479(+) (radA) [Janthinobacterium sp. 17J80-10]
ATGGCCAAGCCTAAAACCAATTACACCTGCACCGAATGCGGCGGCGTCTCTGCCAAGTGGGCGGGGCAGTGCCCGGCCTG
CGGCCAGTGGAACACCCTGGTGGAAACCCTGGTCGAAACCGTCGGCAACCGCTATTCGACGCCGCAGCAGGGGCTGGCGC
AAGCCACCCCGGTCCTGAGCCTGGCCGACATCGAGGCGATCGACGTGCCGCGTTTTACGACCGGCATCGAGGAATTCGAC
CGGGTGCTGGGCGGCGGGCTCGTCGCCGGTGGCGTGGTGCTGATCGGTGGCGACCCCGGCATCGGCAAGTCGACCCTGCT
GCTGCAGGCGCTGGCCAATCTTTCCCGCGAGCGCAAGGTCCTTTACATCAGCGGCGAAGAATCCGGCGCCCAGATCGCCC
TGCGCGCCAAGCGCCTGGCAGTCGATGCCCAGGAACTGAAGCTGCAGGCGGAAATCCAGCTGGAAAAGATCCTCGCCACG
CTGGCCGAGCAAAAGCCCCAGGTGGCGGTCATCGATTCGATCCAGACCATGTATTCGGATGCGCTGACCTCGGCGCCGGG
CTCTGTCGCCCAGGTGCGCGAATGCGCCGCGCAACTGACCCGGGTGGCCAAGCAGACCGGCATCACCATCATCATGGTCG
GCCACGTCACCAAGGAAGGCGCGCTGGCAGGCCCGCGCGTGCTCGAGCACATCGTTGATACCGTGCTGTATTTCGAGGGC
GACACGCATTCGAGCTTTCGCCTGGTGCGCGCCTTCAAGAACCGTTTCGGCGCGGTCAACGAACTGGGCGTGTTTGCCAT
GACGGAGAAGGGCTTGAAGGGGGTTTCCAATCCTTCGGCACTGTTCCTGTCGCAACATGATAGCCAGGTGGCGGGCTCCT
GCGTGATGGTGACGCAGGAAGGCACGCGTCCGCTCCTCGTGGAAATCCAGGCGCTGGTCGATACCTCGCACGTGCCCAAC
GCGCGGCGGCTGTCGGTCGGCCTGGAGCAAAACCGCCTGGCCATGCTGCTGGCAGTGCTGCACCGGCATGCCGGCGTGGC
CGCGTTCGACCAGGATGTCTTCATCAATGCGGTGGGCGGCGTCAAGATCACGGAGCCGGCGGCTGACCTGGCAGTCTTGC
TGGCGATTCAATCATCCATGCGCAACAAGCCGCTGCCGCGCGGACTTGCGGTATTCGGCGAAGTCGGCCTGGCGGGTGAG
ATCCGCCCGGCGCCGCGCGGCCAGGAGCGCTTGCGCGAAGCCGCCAAGCTGGGTTTTTCGATCGCCATGATCCCGAAAGC
CAATGCGCCGAAACAGAAGATCGAGGGCCTGACCATCATTGGCGTCGAGCGCATCGACGAGGCGCTCGACAAGATCCGCA
ATACCGACCTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410USR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.562

0.499
  radA Streptococcus pneumoniae Rx1

47.817

100

0.479
  radA Streptococcus pneumoniae D39

47.817

100

0.479
  radA Streptococcus pneumoniae R6

47.817

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.817

100

0.479
  radA Streptococcus mitis SK321

47.817

100

0.479
  radA Streptococcus mitis NCTC 12261

47.588

99.781

0.475

Multiple sequence alignment