Detailed information NTG0339259

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: EKL02_RS03785
• Genome accession: NZ_CP035311
• Coordinates: 852400..853527 (-)
• Length: 375 a.a.
• NCBI ID: WP_128900801.1
• Uniprot ID: A0A410UPY2
• Organism: Janthinobacterium sp. 17J80-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 847400..858527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKL02_RS03760 (EKL02_03760)	cyoE	848043..848927 (+)	885	WP_128900796.1	heme o synthase	-
EKL02_RS03765 (EKL02_03765)	-	849025..849564 (+)	540	WP_241687904.1	SCO family protein	-
EKL02_RS03770 (EKL02_03770)	rpoH	849659..850561 (-)	903	WP_128900798.1	RNA polymerase sigma factor RpoH	-
EKL02_RS03775 (EKL02_03775)	-	850781..851707 (-)	927	WP_128900799.1	permease-like cell division protein FtsX	-
EKL02_RS03780 (EKL02_03780)	-	851704..852399 (-)	696	WP_128900800.1	ATP-binding cassette domain-containing protein	-
EKL02_RS03785 (EKL02_03785)	pilA	852400..853527 (-)	1128	WP_128900801.1	signal recognition particle-docking protein FtsY	Machinery gene
EKL02_RS03790 (EKL02_03790)	-	853652..855016 (+)	1365	WP_128900802.1	pitrilysin family protein	-
EKL02_RS03795 (EKL02_03795)	-	855045..856394 (+)	1350	WP_128900803.1	pitrilysin family protein	-
EKL02_RS03800 (EKL02_03800)	rsmD	856408..857070 (+)	663	WP_128900804.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
EKL02_RS03805 (EKL02_03805)	coaD	857099..857599 (+)	501	WP_128900805.1	pantetheine-phosphate adenylyltransferase	-
EKL02_RS03810 (EKL02_03810)	-	857624..857881 (+)	258	WP_128900806.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 39727.15 Da
• Isoelectric Point: 5.9955

>NTDB_id=339259 EKL02_RS03785 WP_128900801.1 852400..853527(-) (pilA) [Janthinobacterium sp. 17J80-10]
MFSFFKRKPKETAAPAAAPVEEIVAEKAQEPVAPVPLSPAVPLPAAATPPAPVIFPPPPEAVQEVEIIPAPAPSAEQKRS
WLTRLKAGLSKTSASLTTLFVGAKIDDDLYEELESALLMADAGIDATQFLLDTLKKKVKDEKLTEAEQVKTALKALLIGL
LTPLQKPLVLGRHQPMVMMIAGVNGAGKTTTIGKLAKHLQAHHQSVLLAAGDTFRAAAREQLAVWGERNNVTVIAQESGD
PAAVAFDAVQSALARGTDVVMVDTAGRLPTQLHLMEELKKVKRVIGKSMAEAPHEVLLVIDGNTGQNALTQVKAFDDALQ
LTGLVVTKLDGTAKGGVLAAIARTRPVPVYFIGVGEGIEDLQPFNAQEFVDALLS

Nucleotide

• Length: 1128 bp

>NTDB_id=339259 EKL02_RS03785 WP_128900801.1 852400..853527(-) (pilA) [Janthinobacterium sp. 17J80-10]
ATGTTTAGTTTCTTCAAAAGAAAACCGAAAGAGACAGCCGCGCCTGCTGCCGCCCCTGTCGAGGAAATCGTTGCCGAAAA
GGCACAAGAGCCAGTTGCGCCTGTGCCGCTGTCCCCTGCAGTACCCCTACCTGCAGCCGCAACGCCTCCTGCGCCGGTGA
TTTTTCCGCCCCCACCTGAGGCAGTGCAGGAAGTCGAGATTATCCCGGCTCCCGCGCCATCGGCTGAGCAAAAACGCTCA
TGGCTGACCCGGCTCAAAGCCGGCTTGTCGAAAACTTCTGCCAGCCTCACAACGCTGTTTGTCGGCGCCAAGATTGACGA
TGATTTGTATGAGGAACTGGAATCGGCGCTGCTGATGGCCGATGCCGGCATCGATGCCACGCAATTCCTGCTGGATACCC
TGAAGAAAAAGGTCAAGGACGAGAAGCTGACCGAAGCCGAGCAAGTCAAGACGGCACTCAAGGCGCTGCTGATCGGTCTC
CTGACGCCGCTGCAAAAGCCGCTGGTGCTGGGCCGCCATCAACCCATGGTCATGATGATCGCCGGCGTCAACGGCGCCGG
CAAGACCACCACCATCGGCAAGCTGGCCAAGCATCTGCAAGCCCATCATCAATCGGTGCTGCTGGCCGCCGGCGATACGT
TCCGCGCTGCGGCACGCGAACAGCTGGCGGTCTGGGGCGAGCGCAACAATGTCACCGTGATTGCCCAGGAATCGGGCGAC
CCGGCAGCCGTTGCCTTCGACGCCGTGCAGTCGGCGCTGGCCCGTGGCACCGACGTGGTAATGGTCGATACCGCCGGGCG
CCTGCCGACCCAGTTGCACCTGATGGAAGAACTCAAGAAGGTCAAGCGCGTGATCGGCAAAAGCATGGCGGAAGCACCGC
ATGAAGTGCTGCTGGTCATCGATGGCAATACCGGGCAAAATGCGCTTACGCAAGTCAAGGCCTTCGACGATGCCCTGCAA
CTGACCGGCCTGGTCGTCACCAAGCTTGACGGCACCGCCAAGGGCGGCGTGCTGGCGGCAATCGCCCGCACACGCCCGGT
GCCGGTGTATTTCATTGGCGTCGGCGAAGGCATCGAAGACTTGCAGCCTTTTAATGCGCAAGAATTTGTGGATGCCTTGT
TAAGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (176-374)

• SRP54-type protein, helical bundle domain (SRP54_N) (95-155)

3D structure

• AlphaFold DB: A0A410UPY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.278	100	0.581