Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EST43_RS10735 Genome accession   NZ_CP035309
Coordinates   2080098..2081051 (-) Length   317 a.a.
NCBI ID   WP_158290760.1    Uniprot ID   -
Organism   Macrococcoides canis strain KM0218     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075098..2086051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EST43_RS10715 (EST43_10695) - 2075867..2077087 (+) 1221 WP_138072662.1 MFS transporter -
  EST43_RS10720 (EST43_10700) - 2077220..2078260 (-) 1041 WP_138072664.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  EST43_RS10725 (EST43_10705) - 2078353..2079159 (-) 807 WP_138072666.1 ABC transporter ATP-binding protein -
  EST43_RS10730 (EST43_10710) - 2079152..2080105 (-) 954 WP_138072668.1 iron chelate uptake ABC transporter family permease subunit -
  EST43_RS10735 (EST43_10715) ceuB 2080098..2081051 (-) 954 WP_158290760.1 ABC transporter permease Machinery gene
  EST43_RS10740 (EST43_10720) - 2081232..2082584 (+) 1353 WP_133420094.1 APC family permease -
  EST43_RS10745 (EST43_10725) - 2082829..2083191 (-) 363 WP_133420095.1 DUF423 domain-containing protein -
  EST43_RS10750 (EST43_10730) - 2083211..2083519 (-) 309 WP_138072672.1 DUF5327 family protein -
  EST43_RS10755 (EST43_10735) - 2083516..2084184 (-) 669 WP_267128395.1 uracil-DNA glycosylase -
  EST43_RS10760 (EST43_10740) thiD 2084271..2085101 (+) 831 WP_086043484.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EST43_RS10765 (EST43_10745) - 2085226..2085582 (+) 357 WP_138072674.1 YojF family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34767.46 Da        Isoelectric Point: 10.5554

>NTDB_id=339251 EST43_RS10735 WP_158290760.1 2080098..2081051(-) (ceuB) [Macrococcoides canis strain KM0218]
MKIIYTILLLLILSIISMFIGVVDLSPSNLLNLDENQKNILLNSRLPRTFAIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLIAMIFFAQAPLLIKLSFSIVSAIIGTMMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAV
QSISNFFVGDFSMITKGRYEVLFIIIPMVIVIYLFAHHFTIVGMGESFSKNLGISYAKIMNLGVIIAAIVSATVVVTIGV
LPFLGLIIPNIVGLFVGDHMNKALPYTALFGAILVMVADIFSRLIIFPYEIPIGLTLGIVGSIIFMAILLKRRKSYV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=339251 EST43_RS10735 WP_158290760.1 2080098..2081051(-) (ceuB) [Macrococcoides canis strain KM0218]
ATGAAAATAATTTACACCATACTACTGTTGCTGATTTTGTCTATAATCTCTATGTTTATTGGTGTTGTAGATTTAAGTCC
ATCAAATTTACTTAATTTAGATGAGAATCAAAAGAATATTTTGTTGAACAGTCGACTGCCGAGGACGTTTGCTATTATAT
TAGCGGGTGTTGCATTAAGTGTAGCTGGTTTGTTAATGCAGCAGCTCACACGTAATAAATTTGTATCACCAACGACAGCA
GGTACGATGGATTTTGCGAAGTTTGGTGTATTGATTGCAATGATATTCTTTGCACAGGCACCATTACTTATTAAATTATC
GTTCAGTATTGTTTCAGCGATTATCGGTACGATGATGTTTATGTGGATTGTCAATCGCATTAAGTTTAAGGATGCAATCT
TCATTCCGCTTGTAGGGCTCATGCTCGGTAACATCGTTTCAAGTTTAGCGACGTTTATGGCACTGCGTTTTAATGCGGTG
CAAAGTATTTCTAACTTCTTTGTGGGAGATTTCTCGATGATAACGAAAGGGCGTTATGAAGTATTATTCATTATCATTCC
GATGGTTATCGTGATTTATCTCTTTGCACATCATTTTACAATCGTCGGAATGGGTGAATCTTTCAGTAAGAACTTAGGTA
TATCTTACGCAAAGATAATGAATCTCGGTGTTATTATTGCAGCAATTGTATCTGCAACAGTAGTGGTAACGATTGGGGTA
TTACCATTTTTAGGATTAATTATTCCGAATATAGTTGGATTGTTTGTCGGTGATCATATGAATAAAGCATTACCATACAC
AGCACTATTTGGTGCGATTCTCGTCATGGTAGCAGATATTTTCAGTCGATTGATCATCTTCCCTTACGAGATTCCAATCG
GTCTCACGCTTGGTATCGTTGGAAGTATTATCTTTATGGCAATTCTCCTGAAGAGGAGGAAGTCATATGTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.837

96.845

0.483

Multiple sequence alignment