Detailed information NTG0339166

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F1719_RS12685
• Genome accession: NZ_CP043852
• Coordinates: 2508803..2509801 (-)
• Length: 332 a.a.
• NCBI ID: WP_203448612.1
• Uniprot ID: -
• Organism: Escherichia coli ATCC 8739
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2503803..2514801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F1719_RS12665 (F1719_12980)	otnK	2504578..2505840 (+)	1263	WP_000590386.1	3-oxo-tetronate kinase	-
F1719_RS12670 (F1719_12985)	ygbL	2505837..2506475 (+)	639	WP_001278994.1	aldolase	-
F1719_RS12675 (F1719_12990)	ygbM	2506480..2507256 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
F1719_RS12680 (F1719_12995)	ygbN	2507345..2508709 (+)	1365	WP_000104461.1	GntP family transporter	-
F1719_RS12685 (F1719_13000)	rpoS	2508803..2509801 (-)	999	WP_203448612.1	RNA polymerase sigma factor RpoS	Regulator
F1719_RS12690 (F1719_13005)	nlpD	2509864..2510958 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
F1719_RS12695 (F1719_13010)	pcm	2511143..2511769 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F1719_RS12700 (F1719_13015)	surE	2511763..2512524 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F1719_RS12705 (F1719_13020)	truD	2512505..2513554 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
F1719_RS12710 (F1719_13025)	ispF	2513551..2514030 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F1719_RS12715 (F1719_13030)	ispD	2514030..2514740 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 38201.09 Da
• Isoelectric Point: 4.5298

>NTDB_id=339166 F1719_RS12685 WP_203448612.1 2508803..2509801(-) (rpoS) [Escherichia coli ATCC 8739]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLDLGEIGYSPLLTAEEEVY
FARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAI
MNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL
ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ
TQGLNIEALFRE

Nucleotide

• Length: 999 bp

>NTDB_id=339166 F1719_RS12685 WP_203448612.1 2508803..2509801(-) (rpoS) [Escherichia coli ATCC 8739]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTAT
TTTGCGCGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAAT
TGCCCGCCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAG
AGAAGTTTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATT
ATGAACCAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTT
GTCCCATAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTA
TGCTTCGTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTG
GCCGATGAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGA
GCTGAACGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAG
GTCGTGAAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAA
ACGCAGGGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (96-165)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-90)

• Sigma-70, region 4 (Sigma70_r4) (264-317)

• Sigma-70 region 3 (Sigma70_r3) (176-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.615	97.892	0.711