Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VC395_RS03040 Genome accession   NC_012582
Coordinates   613909..614427 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae O395     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 608909..619427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC395_RS03030 (VC395_0571) - 609319..612174 (+) 2856 WP_001233050.1 pitrilysin family protein -
  VC395_RS03035 (VC395_0573) gshA 612286..613860 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  VC395_RS03040 (VC395_0574) luxS 613909..614427 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  VC395_RS03045 (VC395_0575) - 614497..615777 (-) 1281 WP_000340986.1 HlyC/CorC family transporter -
  VC395_RS03050 (VC395_0576) - 615860..616654 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  VC395_RS03055 (VC395_0577) ffh 616867..618252 (+) 1386 WP_000462721.1 signal recognition particle protein -
  VC395_RS03060 (VC395_0578) rpsP 618488..618736 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  VC395_RS03065 (VC395_0579) rimM 618764..619318 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=33915 VC395_RS03040 WP_001130227.1 613909..614427(+) (luxS) [Vibrio cholerae O395]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=33915 VC395_RS03040 WP_001130227.1 613909..614427(+) (luxS) [Vibrio cholerae O395]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment