Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SSUST3_RS04460 Genome accession   NC_015433
Coordinates   908777..912430 (+) Length   1217 a.a.
NCBI ID   WP_013730340.1    Uniprot ID   -
Organism   Streptococcus suis ST3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 903777..917430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST3_RS04455 (SSUST3_0896) rexB 905511..908777 (+) 3267 WP_002935479.1 ATP-dependent nuclease subunit B Machinery gene
  SSUST3_RS04460 (SSUST3_0897) rexA 908777..912430 (+) 3654 WP_013730340.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SSUST3_RS04465 (SSUST3_0898) plsY 912440..913084 (-) 645 WP_009909724.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  SSUST3_RS04470 (SSUST3_0899) parE 913227..915176 (+) 1950 WP_002935482.1 DNA topoisomerase IV subunit B -
  SSUST3_RS04475 (SSUST3_0900) fic 915200..915802 (+) 603 WP_002935485.1 protein adenylyltransferase Fic -
  SSUST3_RS04480 (SSUST3_0901) - 915835..916329 (+) 495 WP_013730341.1 YkvA family protein -
  SSUST3_RS04485 (SSUST3_0902) - 916332..916784 (+) 453 WP_002935488.1 hypothetical protein -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139687.10 Da        Isoelectric Point: 5.0338

>NTDB_id=33911 SSUST3_RS04460 WP_013730340.1 908777..912430(+) (rexA) [Streptococcus suis ST3]
MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETMDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEQDENGAFRKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIELILEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENVDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQADSQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIISIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAFAKMHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIVMIDRALANDKDLADVEEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQDNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAKKYDGKKADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAVHAEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVKVN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=33911 SSUST3_RS04460 WP_013730340.1 908777..912430(+) (rexA) [Streptococcus suis ST3]
ATGGCTTTTGAACAATTTTTAAGCGCAGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CCTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGCGTAGGGATTGATCAGCTCTTTATCTCGACCTTTACA
GTCAAAGCGGCTGGTGAGTTGAAGGAGCGGATCGAGAAAAATCTCAATGAAACCATTGCGGAGACGATGGATATGGACTT
GCGTCGGCATTTGTCAGCCCAGTTGGCGGATTTGACCAAGGCGGATATTGGGACAATGGACTCCTTTACGCAGAAATTGG
TAACGACTTACGGTTATAGCCTTGGCATTTCTCCACAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAACAGGATGAAAATGGTGCATTCCGAAAATTGGTACGCAATTT
TTCAGGCAACCGGAAGGATAATGGTGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGCCAATCGACAAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCTGATCTTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGTTCCGCCAAGTATTTTGCAAATGTGGAAGAAGTTTTAGATTTGCTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAGCGGGTTGAAAAAGTCCTTCTTATCAACGACCAGTCCAGAGGCAAGGGTCTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCTGGACTACGAGATTTGGGGCA
GGAAGTTTATGAATTAACCCTGCTGAAAGACTATCAGATTCAAGCTTTGCCAATGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGTGGACATTCGCCAGTTTTTCCAAGAAAAATACCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGCTGGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGATATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAATTTGAACTTTACCAGGCAGATTCTCAGGCTGGA
AAATTGATTTTGCTTAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCGACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGATGAAACCCACAGTCTAGTGGCTGGGAGTCCCGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATACTTGATTTACGACCAGCAGGATAGCGCAAACTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATCGAGGTTGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTGCAAAAACGGACGCACAATGACCTCATTATATCCATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATTATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCTCTTCTCAAATCGCCTATGTTCCGATTCGATGAGGATGAGCTGACACGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCAGCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTATCTATTTTGGAAAACTGGCGTGCTTTTGCCAAAATGCATTCTATTTATGAC
CTGATTTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTCGGTGCTCTTCCAAATGGCAGCAAGCGTCAGGCAAA
TCTATATGCCCTAGGTTTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGCTTGTCTCGTTTCATCGTCATGATTG
ACCGTGCCTTAGCAAATGACAAGGACTTGGCAGATGTAGAAGAGTTTCTACCGCAAAATGCTGTTCAGCTGATGACCATT
CATAAGTCAAAAGGTCTAGAGTTCAAATATGTCTTCCTCATGAACATCGATAAACGATTCAACTTGGAAGACCATTACCA
GTCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTGAATAGCCCATTAC
CTCAGGTGCGAGTCTTAATGAACACCCTTCCTTATCAAGATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCAGAACAA
ATGCGGTTGCTTTATGTTGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGGCAATGCTGATAAGTTAGC
TAAAAAATACGATGGCAAAAAGGCAGATGGCGTACTAGCCCAATCAACTCGTGAAAGCGTGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGAAAACTTACATTGAAGAGTAAGCTAGAAGATGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATTGC
TCAGGCCTTGGACCAGTTGTCTTCTGTTCAAGAGTTGAACGAACGCTATAAGGTTGCCATTGAATTGCCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCTAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGAAGCCCTAGAAGCTGTTCATGCTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCACCATTTGCAAGTTTGCAGACAGATTCTGTATCTCAGGAAAACTTTGTCCTTCGTGGGATTAT
AGATGGCTACCTACTATATGATGATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAACCAAGCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCCGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGAATAGAAGTGGTCGAAGTCAAGGTAAACTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.84

100

0.521

Multiple sequence alignment