Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   F1612_RS04095 Genome accession   NZ_CP043843
Coordinates   829515..830228 (-) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain NCCP 16830     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 824515..835228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1612_RS04065 (F1612_04155) sph 824894..825718 (-) 825 Protein_793 sphingomyelin phosphodiesterase -
  F1612_RS04070 (F1612_04160) - 825775..826812 (-) 1038 WP_000857198.1 tyrosine-type recombinase/integrase -
  F1612_RS04075 (F1612_04165) - 827005..827709 (-) 705 WP_017804779.1 type II toxin-antitoxin system PemK/MazF family toxin -
  F1612_RS04080 (F1612_04170) - 827849..828016 (-) 168 WP_000705238.1 hypothetical protein -
  F1612_RS04085 (F1612_04175) - 828220..828561 (-) 342 WP_000591749.1 hypothetical protein -
  F1612_RS04090 (F1612_04180) - 828567..829499 (-) 933 WP_117221508.1 exonuclease domain-containing protein -
  F1612_RS04095 (F1612_04185) irvR 829515..830228 (-) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  F1612_RS04100 (F1612_04190) - 830191..830365 (+) 175 Protein_800 transcriptional regulator -
  F1612_RS04105 (F1612_04195) - 830362..830625 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  F1612_RS04110 (F1612_04200) - 830641..830856 (+) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  F1612_RS04115 (F1612_04205) - 830845..831174 (-) 330 WP_158172956.1 hypothetical protein -
  F1612_RS04120 (F1612_04210) - 831225..831977 (+) 753 WP_117221507.1 phage antirepressor KilAC domain-containing protein -
  F1612_RS04125 (F1612_04215) - 831990..832250 (+) 261 WP_000435343.1 hypothetical protein -
  F1612_RS14110 - 832274..832429 (-) 156 Protein_806 hypothetical protein -
  F1612_RS04135 (F1612_04220) - 832484..832810 (+) 327 WP_001025595.1 hypothetical protein -
  F1612_RS14115 - 832807..832906 (+) 100 Protein_808 hypothetical protein -
  F1612_RS04145 (F1612_04230) - 833055..833378 (+) 324 WP_001120937.1 DUF771 domain-containing protein -
  F1612_RS04150 (F1612_04235) - 833375..833536 (+) 162 WP_000048129.1 DUF1270 family protein -
  F1612_RS04155 (F1612_04240) - 833626..833943 (+) 318 WP_000829610.1 hypothetical protein -
  F1612_RS04160 (F1612_04245) - 833948..834208 (+) 261 WP_001556704.1 DUF1108 family protein -
  F1612_RS04165 (F1612_04250) - 834221..834757 (+) 537 WP_001004336.1 host-nuclease inhibitor Gam family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=339054 F1612_RS04095 WP_001031454.1 829515..830228(-) (irvR) [Staphylococcus aureus strain NCCP 16830]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=339054 F1612_RS04095 WP_001031454.1 829515..830228(-) (irvR) [Staphylococcus aureus strain NCCP 16830]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401

Multiple sequence alignment