Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   EQ029_RS00215 Genome accession   NZ_CP035291
Coordinates   43926..45287 (-) Length   453 a.a.
NCBI ID   WP_057504845.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain ATCC 29970     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38926..50287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQ029_RS00185 (EQ029_00185) - 39137..39448 (-) 312 WP_031870514.1 DUF960 family protein -
  EQ029_RS00190 (EQ029_00190) - 39535..39885 (-) 351 WP_031870515.1 SAUGI family uracil-DNA glycosylase inhibitor -
  EQ029_RS00195 (EQ029_00195) - 40415..41065 (-) 651 WP_031870516.1 hypothetical protein -
  EQ029_RS00200 (EQ029_00200) - 41115..41624 (-) 510 WP_031870517.1 hypothetical protein -
  EQ029_RS00205 (EQ029_00205) - 41659..42171 (-) 513 WP_031870518.1 hypothetical protein -
  EQ029_RS00210 (EQ029_00210) ccrB 42298..43929 (-) 1632 WP_031870519.1 cassette chromosome recombinase CcrB Machinery gene
  EQ029_RS00215 (EQ029_00215) ccrA 43926..45287 (-) 1362 WP_057504845.1 cassette chromosome recombinase CcrA Machinery gene
  EQ029_RS00220 (EQ029_00220) - 45474..47243 (-) 1770 WP_031870521.1 cassette chromosome replicative helicase -
  EQ029_RS00225 (EQ029_00225) - 47243..47539 (-) 297 WP_031870522.1 cassette chromosome ssDNA-binding protein -
  EQ029_RS00230 (EQ029_00230) - 47731..48766 (-) 1036 Protein_43 hypothetical protein -
  EQ029_RS00235 (EQ029_00235) - 49009..49671 (+) 663 WP_249038003.1 hypothetical protein -
  EQ029_RS00240 (EQ029_00240) - 49726..50217 (+) 492 Protein_45 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 53205.31 Da        Isoelectric Point: 9.8623

>NTDB_id=338970 EQ029_RS00215 WP_057504845.1 43926..45287(-) (ccrA) [Staphylococcus haemolyticus strain ATCC 29970]
MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSHVTFYDDKKTGRHTKRSGYQKMVEMITSGKCKVLCCYRLNRLHRN
LKNAIQFFEICKKHQVTIISVNDGYFDLSKEFDRFRLNILMSLAEMESNNISEQTRNGIREKAKQGKLITTHAPFGYRYK
QGHFVVHEEEAYTVKVVYCWYLQGLGYKKISQHLDNNPKLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT
FEEAQERRIHKQHNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNEAYHTCPFKGINAQMIETEILST
CKAYCDNQSFHDKLNKTVLKALKHQQIKHKETHLTQAQLIEKLAQNRIDVKTFKRLSASCKSEENYPTYSTYQIDDKLKY
VIKNKITLQDIAPLIDEITITQTKQLQGIYFKNTPLNIVEQSHLITPERNEVI

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=338970 EQ029_RS00215 WP_057504845.1 43926..45287(-) (ccrA) [Staphylococcus haemolyticus strain ATCC 29970]
ATGGAAGAAGCCATTGCTTACGTACGTCAAAGTACATTAAAACAACAAAGCTTAGCGACACAGAAATCACTTATTATGGA
TACTGCTAAACAATATGGATGGTCTCATGTGACGTTTTATGATGATAAAAAAACAGGTCGACATACAAAACGTTCGGGCT
ATCAAAAAATGGTAGAAATGATTACATCTGGAAAATGTAAAGTATTATGTTGTTATCGTCTGAATCGACTTCATCGTAAT
TTGAAAAACGCTATACAATTCTTTGAAATTTGTAAAAAGCATCAAGTCACAATCATCAGCGTGAATGATGGCTATTTTGA
CTTATCTAAAGAATTTGATCGCTTTCGCCTAAACATACTTATGAGTCTAGCTGAAATGGAGTCTAATAATATCAGTGAAC
AGACACGAAATGGGATAAGAGAAAAAGCCAAACAAGGTAAGCTAATCACAACTCATGCTCCGTTTGGTTATCGTTACAAA
CAAGGTCATTTTGTTGTACATGAAGAAGAAGCGTATACAGTCAAAGTGGTCTATTGCTGGTACTTACAAGGGCTAGGCTA
CAAAAAAATTTCCCAACATTTAGATAACAACCCTAAGCTTATTCCACGTAAGCCCTATCAAGTTAGAAATATTCTCTTGA
ACCCTAATTATTGTGGTCGTGTCATTAATAAATATGGAACATTTAATGATATCGTTCCACCTATTATTGATATTGATACG
TTTGAAGAAGCACAAGAGCGTCGTATTCATAAACAACACAATCGATCCAATTCTAGAAATAAGTTAAAGCGACGAATCAA
ATGTCCTTACTGTCAATCAACATTAACAAACTTAACGATAAAAAAAGAAAATTACTCTCTACGTTACTACGTTTGTCCTA
AGAATATGAATGAAGCTTATCATACGTGTCCATTTAAAGGTATCAATGCACAAATGATTGAAACAGAGATCCTCAGCACT
TGTAAAGCGTATTGTGACAATCAATCATTTCATGACAAATTAAATAAGACAGTACTAAAAGCTCTAAAACACCAACAAAT
AAAGCATAAAGAAACCCATCTAACACAAGCACAATTGATTGAAAAGCTAGCTCAAAATCGTATTGATGTAAAAACGTTCA
AACGTTTATCTGCTAGTTGTAAAAGTGAAGAGAATTATCCTACTTATTCAACCTACCAAATCGATGACAAATTAAAATAT
GTCATAAAAAATAAAATAACTTTACAGGACATAGCACCTTTGATTGATGAAATTACAATAACTCAAACTAAACAATTACA
AGGAATCTACTTTAAAAATACTCCACTCAATATCGTTGAACAATCACATTTAATAACTCCTGAAAGGAATGAAGTCATAT
GA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Recombinase (Recombinase)

(168-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

54.853

97.792

0.536
  ccrA Staphylococcus aureus N315

51.242

97.792

0.501

Multiple sequence alignment