Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   F1748_RS16335 Genome accession   NZ_CP043821
Coordinates   3272409..3273401 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain RM10740     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3267409..3278401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1748_RS16310 (F1748_16390) ygbN 3268063..3269427 (+) 1365 WP_000104429.1 GntP family transporter -
  F1748_RS16315 (F1748_16395) - 3269467..3269703 (-) 237 WP_000562991.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  F1748_RS16320 (F1748_16400) - 3269714..3271141 (-) 1428 WP_000863194.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  F1748_RS16325 (F1748_16405) - 3271141..3271734 (-) 594 WP_000767707.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  F1748_RS16330 (F1748_16410) - 3271881..3272288 (+) 408 WP_001208070.1 MarR family winged helix-turn-helix transcriptional regulator -
  F1748_RS16335 (F1748_16415) rpoS 3272409..3273401 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  F1748_RS16340 (F1748_16420) nlpD 3273464..3274558 (-) 1095 WP_319946520.1 murein hydrolase activator NlpD -
  F1748_RS16345 (F1748_16425) pcm 3274743..3275369 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  F1748_RS16350 (F1748_16430) surE 3275363..3276124 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  F1748_RS16355 (F1748_16435) truD 3276105..3277154 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  F1748_RS16360 (F1748_16440) ispF 3277151..3277630 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  F1748_RS16365 (F1748_16445) ispD 3277630..3278340 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=338918 F1748_RS16335 WP_000081550.1 3272409..3273401(-) (rpoS) [Escherichia coli strain RM10740]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=338918 F1748_RS16335 WP_000081550.1 3272409..3273401(-) (rpoS) [Escherichia coli strain RM10740]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATAGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715